Local Execution - Githubissues

fairagro / m4.4_sciwin_client

🦀 SciWIn Client: Reproducible computational Workflows made easy!

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Local Execution #27

Closed JensKrumsieck closed 5 days ago

JensKrumsieck commented 2 weeks ago

s4n is able to call cwltool for local execution via s4n execute local -r cwltool <FILE> <ARGS> (-r is also --runner)

For scenarios where cwltool is not available (e.g. Windows) there is also s4n execute local <FILE> <ARGS> which is a basic local runner only accepting CommandLineTools which handles most of the simple stuff CWL can do (48/195 tool conformance tests pass)

JensKrumsieck commented 1 week ago

I think this is ready for merge: The current status:

Can execute local CWL Files using CWLTool -> s4n execute local --runner cwltool
Can execute local CWL CommandLineTools using a custom runner -> s4n execute local --runner custom or s4n execute local
- Workflows currently not in supported by custom runner as we have no internal representation yet due to not having the workflow commands ready
- Custom Runner passes most "usual" cases of CWL Conformance Tests, but a lot does not work yet (like inline javascript, nullables, arrays, Any-Type) which currently fails because CWL with these features can not be parsed yet
- Runner ignores docker requirements for now
- Conformance currently is 48/195 = 25%
- Coverage: