IO Error There are not appropriate files in dir

[camilocalderon]

Hello all, After processing my data with Illumiprocessor (no errors) I can't run either Velvet or Abyss. I get the following error:

IOError("There are not appropriate files in {}".format(dir)) IOError: There are not appropriate files in /Users/cace/UCE_DATA/uce_anoura/clean-fastq/geoffroyi12/split-adapter-quality-trimmed

I attach a view of my folder structure and the assembly config file. macOS Sierra, Java 1.7.

My Abyss command:

phyluce_assembly_assemblo_abyss \ --config assembly.conf \ --output /Users/cace/UCE_DATA/uce_anoura/assembly\ --kmer 35 \ --subfolder split-adapter-quality-trimmed \ --cores 4 \ --clean \ --log /Users/cace/UCE_DATA/uce_anoura/log \

Thank you for your time and help. -Camilo

[brantfaircloth]

Try the phyluce_assembly_assemblo_abyss command after removing the --subfolder split-adapter-quality-trimmed line. That should do it.

[camilocalderon]

That solved the issue. Thank you!