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faircloth-lab / phyluce

software for UCE (and general) phylogenomics
http://phyluce.readthedocs.org/
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phyluce_align_get_smilogram_from_alignments #144

Closed mcfaddenlab closed 5 years ago

mcfaddenlab commented 5 years ago

hi brant,

trying to run the smilogram script, and getting this error. any idea how to fix it? thanks!

phyluce_align_get_smilogram_from_alignments --alignments mafft-nexus-edge-trimmed --output smilogram --input-format nexus --cores 12 --smilogram Traceback (most recent call last): File "/data/mcfadden/aquattrini/PROGRAMS/anaconda2/bin/phyluce_align_get_smilogram_from_alignments", line 377, in main() File "/data/mcfadden/aquattrini/PROGRAMS/anaconda2/bin/phyluce_align_get_smilogram_from_alignments", line 248, in main work = [(args, f) for f in get_files(args.input, args.input_format)] AttributeError: 'Namespace' object has no attribute 'input

mcfaddenlab commented 5 years ago

I realized that i had an old version of the script~ i updated and all is ok.