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faircloth-lab / phyluce

software for UCE (and general) phylogenomics
http://phyluce.readthedocs.org/
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Handle mafft args #170

Closed moskalenko closed 3 years ago

moskalenko commented 5 years ago

I'm not saying this is the best way to handle how to enable users to modify mafft args when running phyluce tools that use mafft like phyluce_align_seqcap_align. This is just an approach I took to help our users. Please take a look.