brantfaircloth
commented
4 years ago Looks like an error related to python versions - are you sure correct conda environments are activated? Maybe also try a reboot.
Closed quattrinia closed 3 years ago
brantfaircloth
commented
4 years ago Looks like an error related to python versions - are you sure correct conda environments are activated? Maybe also try a reboot.
quattrinia
commented
4 years ago Yes, this was an issue with a pandas pkg/python 3
We have been using this script successfully and all of a sudden we cannot figure out why this has stopped working. Any advice?
File "/data/mcfadden/aquattrini/PROGRAMS/anaconda2/bin/phyluce_snp_convert_vcf_to_structure", line 18, in
import pandas as pd
File "/data/mcfadden/aquattrini/PROGRAMS/anaconda2/lib/python2.7/site-packages/pandas/init.py", line 39, in
from pandas.core.api import *
File "/data/mcfadden/aquattrini/PROGRAMS/anaconda2/lib/python2.7/site-packages/pandas/core/api.py", line 16, in
from pandas.core.groupby import groupby
File "/data/mcfadden/aquattrini/PROGRAMS/anaconda2/lib/python2.7/site-packages/pandas/core/groupby/init.py", line 2, in
from pandas.core.groupby.groupby import (
File "/data/mcfadden/aquattrini/PROGRAMS/anaconda2/lib/python2.7/site-packages/pandas/core/groupby/groupby.py", line 17, in
from pandas.compat.numpy import function as nv
File "/data/mcfadden/aquattrini/PROGRAMS/anaconda2/lib/python2.7/site-packages/pandas/compat/numpy/function.py", line 22, in
from pandas.util._validators import (validate_args, validate_kwargs,
File "/data/mcfadden/aquattrini/PROGRAMS/anaconda2/lib/python2.7/site-packages/pandas/util/_validators.py", line 7, in
from pandas.core.dtypes.common import is_bool
File "/data/mcfadden/aquattrini/PROGRAMS/anaconda2/lib/python2.7/site-packages/pandas/core/dtypes/common.py", line 4, in
from pandas.compat import (string_types, text_type, binary_type,
ImportError: cannot import name PY36