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faircloth-lab / phyluce

software for UCE (and general) phylogenomics
http://phyluce.readthedocs.org/
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An error occurred during installation #254

Open qilu521 opened 3 years ago

qilu521 commented 3 years ago

Hi An ERROR REPORT occurred when executing command “conda env create -n phyluce-1.7.1 --file phyluce-1.7.1-py36-Linux-conda.yml” How can I solve this problem？ thanks

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

Traceback (most recent call last):
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 1043, in __call__
    return func(*args, **kwargs)
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/cli/main.py", line 73, in do_call
    exit_code = getattr(module, func_name)(args, parser)
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/cli/main_create.py", line 77, in execute
    directory=os.getcwd())
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/specs/__init__.py", line 40, in detect
    if spec.can_handle():
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/specs/yaml_file.py", line 18, in can_handle
    self._environment = env.from_file(self.filename)
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/env.py", line 144, in from_file
    return from_yaml(yamlstr, filename=filename)
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/env.py", line 129, in from_yaml
    data = yaml_load_standard(yamlstr)
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda/common/serialize.py", line 76, in yaml_load_standard
    return yaml.load(string, Loader=yaml.Loader, version="1.2")
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/main.py", line 924, in load
    return loader._constructor.get_single_data()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/constructor.py", line 106, in get_single_data
    node = self.composer.get_single_node()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/composer.py", line 78, in get_single_node
    document = self.compose_document()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/composer.py", line 104, in compose_document
    self.parser.get_event()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/parser.py", line 163, in get_event
    self.current_event = self.state()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/parser.py", line 239, in parse_document_end
    token = self.scanner.peek_token()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 182, in peek_token
    self.fetch_more_tokens()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 282, in fetch_more_tokens
    return self.fetch_value()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 655, in fetch_value
    self.reader.get_mark(),
ScannerError: mapping values are not allowed here
  in "<byte string>", line 137, column 65:
     ... e" content="{&quot;version&quot;: &quot;4&quot;, &quot;rollouts& ...
                                         ^ (line: 137)

$ /home/liuhy/anaconda2/bin/conda-env create -n phyluce-1.7.1 --file phyluce-1.7.1-py36-Linux-conda.yml

environment variables: CIO_TEST= CONDA_AUTO_UPDATE_CONDA=false CONDA_DEFAULT_ENV=base CONDA_EXE=/home/liuhy/anaconda2/bin/conda CONDA_PREFIX=/home/liuhy/anaconda2 CONDA_PROMPT_MODIFIER=(base) CONDA_PYTHON_EXE=/home/liuhy/anaconda2/bin/python CONDA_ROOT=/home/liuhy/anaconda2 CONDA_SHLVL=1 JAVA_LD_LIBRARY_PATH=/home/liuhy/anaconda2/jre/lib/amd64/server MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles PATH=/home/liuhy/anaconda2/bin:/home/liuhy/perl5/bin:/home/liuhy/anaconda2/ bin:/home/liuhy/anaconda2/condabin:/home/liuhy/Documents/trinityrnaseq -v2.11.0:/home/liuhy/Documents/CAFE/release:/home/liuhy/Documents/iqtr ee-1.6.12-Linux/bin:/home/liuhy/Documents/tRNAscan-SE-2.0:/home/liuhy/ Documents/bwa:/home/liuhy/Documents/PriceSource140408:/home/liuhy/Docu ments/rerun/sratoolkit.2.10.8-centoslinux64/bin:/home/liuhy/Documents /hamstr.v13.2.6-bin- lib/bin/hmmer-3.2.1/src:/home/liuhy/Documents/hamstr.v13.2.6-bin-lib/b in:/home/liuhy/Documents/SPAdes-3.13.0-Linux/bin:/home/liuhy/Documents /blast/ncbi-blast-2.9.0+/bin:/home/liuhy/Documents/phylobayes4.1c/aux ps:/home/liuhy/Documents/phylobayes4.1c/data:/usr/local/cmake-3.16.2/b in:/usr/local/ssl/bin:/sbin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/ bin:/usr/local/sbin:/usr/sbin:/opt/anaconda3/bin:/usr/sbin:/home/liuhy /.local/bin:/home/liuhy/bin QT_PLUGIN_PATH=/usr/lib64/kde4/plugins:/usr/lib/kde4/plugins REQUESTS_CA_BUNDLE= SSL_CERT_FILE=

 active environment : base
active env location : /home/liuhy/anaconda2
        shell level : 1
   user config file : /home/liuhy/.condarc

populated config files : /home/liuhy/.condarc conda version : 4.7.5 conda-build version : 3.4.1 python version : 2.7.11.final.0 virtual packages : base environment : /home/liuhy/anaconda2 (writable) channel URLs : https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch https://conda.anaconda.org/bioconda/linux-64 https://conda.anaconda.org/bioconda/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /home/liuhy/anaconda2/pkgs /home/liuhy/.conda/pkgs envs directories : /home/liuhy/anaconda2/envs /home/liuhy/.conda/envs platform : linux-64 user-agent : conda/4.7.5 requests/2.22.0 CPython/2.7.11 Linux/3.10.0-1062.9.1.el7.x86_64 centos/7.7.1908 glibc/2.17 UID:GID : 1005:1000 netrc file : None offline mode : False

An unexpected error has occurred. Conda has prepared the above report.

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