search

faircloth-lab / phyluce

software for UCE (and general) phylogenomics
http://phyluce.readthedocs.org/
Other
78 stars 49 forks source link

An error occurred during installation #254

Open qilu521 opened 2 years ago

qilu521 commented 2 years ago

Hi An ERROR REPORT occurred when executing command “conda env create -n phyluce-1.7.1 --file phyluce-1.7.1-py36-Linux-conda.yml” How can I solve this problem？ thanks

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

Traceback (most recent call last):
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 1043, in __call__
    return func(*args, **kwargs)
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/cli/main.py", line 73, in do_call
    exit_code = getattr(module, func_name)(args, parser)
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/cli/main_create.py", line 77, in execute
    directory=os.getcwd())
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/specs/__init__.py", line 40, in detect
    if spec.can_handle():
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/specs/yaml_file.py", line 18, in can_handle
    self._environment = env.from_file(self.filename)
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/env.py", line 144, in from_file
    return from_yaml(yamlstr, filename=filename)
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda_env/env.py", line 129, in from_yaml
    data = yaml_load_standard(yamlstr)
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/conda/common/serialize.py", line 76, in yaml_load_standard
    return yaml.load(string, Loader=yaml.Loader, version="1.2")
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/main.py", line 924, in load
    return loader._constructor.get_single_data()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/constructor.py", line 106, in get_single_data
    node = self.composer.get_single_node()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/composer.py", line 78, in get_single_node
    document = self.compose_document()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/composer.py", line 104, in compose_document
    self.parser.get_event()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/parser.py", line 163, in get_event
    self.current_event = self.state()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/parser.py", line 239, in parse_document_end
    token = self.scanner.peek_token()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 182, in peek_token
    self.fetch_more_tokens()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 282, in fetch_more_tokens
    return self.fetch_value()
  File "/home/liuhy/anaconda2/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 655, in fetch_value
    self.reader.get_mark(),
ScannerError: mapping values are not allowed here
  in "<byte string>", line 137, column 65:
     ... e" content="{&quot;version&quot;: &quot;4&quot;, &quot;rollouts& ...
                                         ^ (line: 137)

$ /home/liuhy/anaconda2/bin/conda-env create -n phyluce-1.7.1 --file phyluce-1.7.1-py36-Linux-conda.yml

environment variables: CIO_TEST= CONDA_AUTO_UPDATE_CONDA=false CONDA_DEFAULT_ENV=base CONDA_EXE=/home/liuhy/anaconda2/bin/conda CONDA_PREFIX=/home/liuhy/anaconda2 CONDA_PROMPT_MODIFIER=(base) CONDA_PYTHON_EXE=/home/liuhy/anaconda2/bin/python CONDA_ROOT=/home/liuhy/anaconda2 CONDA_SHLVL=1 JAVA_LD_LIBRARY_PATH=/home/liuhy/anaconda2/jre/lib/amd64/server MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles PATH=/home/liuhy/anaconda2/bin:/home/liuhy/perl5/bin:/home/liuhy/anaconda2/ bin:/home/liuhy/anaconda2/condabin:/home/liuhy/Documents/trinityrnaseq -v2.11.0:/home/liuhy/Documents/CAFE/release:/home/liuhy/Documents/iqtr ee-1.6.12-Linux/bin:/home/liuhy/Documents/tRNAscan-SE-2.0:/home/liuhy/ Documents/bwa:/home/liuhy/Documents/PriceSource140408:/home/liuhy/Docu ments/rerun/sratoolkit.2.10.8-centoslinux64/bin:/home/liuhy/Documents /hamstr.v13.2.6-bin- lib/bin/hmmer-3.2.1/src:/home/liuhy/Documents/hamstr.v13.2.6-bin-lib/b in:/home/liuhy/Documents/SPAdes-3.13.0-Linux/bin:/home/liuhy/Documents /blast/ncbi-blast-2.9.0+/bin:/home/liuhy/Documents/phylobayes4.1c/aux ps:/home/liuhy/Documents/phylobayes4.1c/data:/usr/local/cmake-3.16.2/b in:/usr/local/ssl/bin:/sbin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/ bin:/usr/local/sbin:/usr/sbin:/opt/anaconda3/bin:/usr/sbin:/home/liuhy /.local/bin:/home/liuhy/bin QT_PLUGIN_PATH=/usr/lib64/kde4/plugins:/usr/lib/kde4/plugins REQUESTS_CA_BUNDLE= SSL_CERT_FILE=

 active environment : base
active env location : /home/liuhy/anaconda2
        shell level : 1
   user config file : /home/liuhy/.condarc

populated config files : /home/liuhy/.condarc conda version : 4.7.5 conda-build version : 3.4.1 python version : 2.7.11.final.0 virtual packages : base environment : /home/liuhy/anaconda2 (writable) channel URLs : https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch https://conda.anaconda.org/bioconda/linux-64 https://conda.anaconda.org/bioconda/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /home/liuhy/anaconda2/pkgs /home/liuhy/.conda/pkgs envs directories : /home/liuhy/anaconda2/envs /home/liuhy/.conda/envs platform : linux-64 user-agent : conda/4.7.5 requests/2.22.0 CPython/2.7.11 Linux/3.10.0-1062.9.1.el7.x86_64 centos/7.7.1908 glibc/2.17 UID:GID : 1005:1000 netrc file : None offline mode : False

An unexpected error has occurred. Conda has prepared the above report.

If submitted, this report will be used by core maintainers to improve future releases of conda. Would you like conda to send this report to the core maintainers?

[y/N]: Timeout reached. No report sent.