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faircloth-lab / phyluce

software for UCE (and general) phylogenomics
http://phyluce.readthedocs.org/
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phyluce_snp_bwa_multiple_align #292

Closed TiagoBelintani closed 1 year ago

TiagoBelintani commented 1 year ago

Hello, everything ok?

I'm using version 1.7.1 and 1.7.2 and when I play "phyluce_snp_bwa_multiple_align" I get no response. Some reason?

print page error:

(phyluce-1.7.2) tiagob@uv2000:/guest/triatominae/tiagob/programs/phyluce> phyluce_snp_bwa_multiple_align If 'phyluce_snp_bwa_multiple_align' is not a typo you can use command-not-found to lookup the package that contains it, like this:

on the contrary:

(phyluce-1.7.2) tiagob@uv2000:/guest/triatominae/tiagob/programs/phyluce> phyluce_probe_get_locus_bed_from_lastz_files usage: phyluce_probe_get_locus_bed_from_lastz_files [-h] --alignments ALIGNMENTS --output OUTPUT [--regex REGEX] [--verbosity {INFO,WARN,CRITICAL}] [--log-path LOG_PATH]

Can you help me?

brantfaircloth commented 1 year ago

This has been replaced by a workflow. You can either use the workflow or use an earlier version of phyluce.