exploding the monolithic fasta by locus?

[lcgraber]

Hi,

Can I explode the monolithic fasta (phyluce_assembly_explode_get_fastas_file) by locus? It is possible according to the tutorial but it doesn't appear that "--by-locus" is an option for the function. I did try using "--split-char locus" but that gave me a fasta file for every locus for every sample (ex. uce-10_ant_species.unaligned.fasta) instead of a fasta of all samples for one locus.

Let me know if there is a way to do this. Thanks!

[brantfaircloth]

The default behavior is to explode by locus (with the alternate being --by-taxon).

[lcgraber]

That did it! Thanks so much!

[brantfaircloth]

You bet 👍