feat: ✨ CWL validations across repo, single instance db, bot restructering, updated CWL github issue template

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PR Summary

• Database Connectivity Addition A new file was added that allows our bot to connect to a MongoDB database.
• Dependencies Addition The bot dependencies were updated to include cwl-ts-auto and url.
• Enhancements to CWL File Interactions A new file was introduced to enable interactions with Common Workflow Language (CWL) files present in the repository.
• Tools Functionality Upgrades
  • The tools module was updated to make use of the new database instance.
  • Several new functions were added:
    1. intializeDatabase: Initiate the database connection.
    2. verifyRepoName: Validate if a repo's name has changed and updates it in the database.
    3. verifyInstallationAnalytics: Check the installation and analytics collections.
    4. isRepoPrivate: Determine if a repository is private.
    5. applyGitHubIssueToDatabase: Link the GitHub issue number to the installation collection in the database.
• Dependency Version Management The versions of the newly added dependencies were recorded in pnpm-lock.yaml.
• CWL Validation Report Display A new file was added to define the template for displaying CWL validation reports.
• API for CWL Validation Report Three new server API files were introduced
  • Retrieve the CWL validation report from the database.
  • Update the CWL validation request with license content and create a PR to include the license file in the repository.
  • Update the CWL validation request with both license content and license ID.
• Variable Renaming An update in the rerun.post.ts file changed the variable issueId to issue_number.
• Additional Interface Definitions A new file defining two interfaces for handling CWL requests and responses was added in the types directory. These interfaces are CwlRequest and CwlRequestGetResponse.