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fairgenomes / fairgenomes-semantic-model

FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.
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Rework pathological state of a material #140

Open joerivandervelde opened 2 years ago

joerivandervelde commented 2 years ago

Good lookups at subtree of https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOBI_0000747&lang=en&viewMode=All&siblings=false

joerivandervelde commented 2 years ago 
name,definition,codesystem,code,iri
reference sample,"A material sample derived from cells or tissue representing a physiologically or phenotypically normal state.",EFO,0009654,http://www.ebi.ac.uk/efo/EFO_0009654
abnormal sample,"A material sample derived from cells or tissue representing an observed or suspected physiologically, genomically or phenotypically abnormal state.",EFO,0009655,http://www.ebi.ac.uk/efo/EFO_0009655
neoplastic sample,"A material sample derived from neoplastic cells or tissue.",EFO,0009656,http://www.ebi.ac.uk/efo/EFO_0009656
cancer cell line sample,"A neoplastic sample derived from a cancer cell line.",EFO,0030035,http://www.ebi.ac.uk/efo/EFO_0030035
metastasis sample,"A neoplastic sample derived from a cancer metastasis (not from a primary tumor).",EFO,0010941,http://www.ebi.ac.uk/efo/EFO_0010941
primary tumor sample,"A neoplastic sample derived from a primary tumor (not from a cancer metastasis).",EFO,0010942,http://www.ebi.ac.uk/efo/EFO_0010942
recurrent tumor sample,"A neoplastic sample derived from a recurrent tumor (not from a primary occurrence of a neoplasm).",EFO,0010943,http://www.ebi.ac.uk/efo/EFO_0010943