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fairgenomes
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fairgenomes-semantic-model
FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.
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Add VKGL/VKGN working group to list of Institutes
#106
joerivandervelde
opened
3 years ago
0
Extend FAIR Genomes with full ISA-Tab schema for X-omics
#105
joerivandervelde
opened
3 years ago
0
Support various b37/hg19 flavours
#104
joerivandervelde
opened
3 years ago
0
Make parent/child relations explicit?
#103
joerivandervelde
opened
3 years ago
0
Consider standardizing qualifiers/modifiers
#102
joerivandervelde
opened
3 years ago
0
Consent form creator should be using DC:creator as predicate
#101
esthervanenckevort
closed
2 years ago
0
RDF resources are not under versioned URLs
#100
joerivandervelde
opened
3 years ago
0
Update to v1.2 snapshot
#99
joerivandervelde
closed
3 years ago
0
Update LODE for v1.1
#98
joerivandervelde
closed
3 years ago
0
Prepare for v1.1
#97
joerivandervelde
closed
3 years ago
0
Fix for ART-DECOR order of concepts and exceptions
#96
joerivandervelde
closed
3 years ago
0
Add Illumina – TruSeq DNA to NGS kits
#95
joerivandervelde
closed
3 years ago
1
Increment version to 1.1-SNAPSHOT
#94
joerivandervelde
closed
3 years ago
0
Fix discrepancy of biospecimentype element vs materialtype lookup
#93
joerivandervelde
closed
3 years ago
1
Last release preparations
#92
joerivandervelde
closed
3 years ago
0
Final preparations for release
#91
joerivandervelde
closed
3 years ago
0
Preparing for release
#90
joerivandervelde
closed
3 years ago
0
Fix MOLGENIS homepage styling
#89
joerivandervelde
closed
3 years ago
1
Include element ontologies in EMX description field
#88
joerivandervelde
closed
3 years ago
1
Add 'lab indication' i.e. reason for testing?
#87
joerivandervelde
closed
2 years ago
2
Generate molgenis_prepare file, replacing setup.sh in Docker image
#86
joerivandervelde
opened
3 years ago
0
Docker hotfix pt2
#85
joerivandervelde
closed
3 years ago
0
Docker hotfix
#84
joerivandervelde
closed
3 years ago
0
Fixing four issues and updated genotypic sex lookups
#83
joerivandervelde
closed
3 years ago
0
chore: upgrade to molgenis commander 2.0.0
#82
fdlk
closed
3 years ago
1
Update Data use permissions description
#81
joerivandervelde
closed
3 years ago
0
Need better description for 'Consent form used'
#80
joerivandervelde
closed
3 years ago
0
Update 'person' nomenclature in consent (and other modules)
#79
joerivandervelde
opened
3 years ago
0
Update 'Collected by'
#78
joerivandervelde
closed
3 years ago
0
Working on data adapter concept
#77
joerivandervelde
closed
3 years ago
0
Minor Docker fix
#76
joerivandervelde
closed
3 years ago
0
chore: run as root inside of docker image
#75
MaxPostema
closed
3 years ago
0
chore: load emx into molgenis docker-compose
#74
fdlk
closed
3 years ago
0
Map FAIR Genomes to BioSchemas
#73
joerivandervelde
opened
3 years ago
0
Perhaps add template and type to Study
#72
joerivandervelde
opened
3 years ago
0
Added installation manual for MOLGENIS Docker
#71
joerivandervelde
closed
3 years ago
0
Harmonize Study with (semantic) ISA-TAB
#70
joerivandervelde
opened
3 years ago
1
In ART-DECOR XML, Concepts should go before all Exceptions
#69
joerivandervelde
closed
3 years ago
0
Fix missing closing tag in ART-DECOR XML
#68
joerivandervelde
closed
3 years ago
0
Fixes for #65 and #66 and improved ART-DECOR output
#67
joerivandervelde
closed
3 years ago
0
Replace InclusionCriteria codes
#66
joerivandervelde
closed
3 years ago
0
Replace MaterialType codes
#65
joerivandervelde
closed
3 years ago
0
Add xsd data types to TTL files
#64
joerivandervelde
opened
3 years ago
0
Curate lookup types
#63
joerivandervelde
closed
3 years ago
1
Add fields to YAML to express 'upper ontologies' for grouping
#62
joerivandervelde
opened
3 years ago
0
Submit FG into OLS
#61
joerivandervelde
opened
3 years ago
1
Merge and some updates
#60
joerivandervelde
closed
3 years ago
0
Rename modifier specification to data use specification
#59
joerivandervelde
closed
3 years ago
0
Alpha version molgenis-emx2 generator
#58
mswertz
closed
3 years ago
0
Shorter name for 'Leaflet and consent form'
#57
joerivandervelde
opened
3 years ago
0
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