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fairtracks / fairtracks_standard

FAIRtracks is a JSON Schema defining a minimal standard for genomic track metadata.
https://fairtracks.net
Creative Commons Attribution 4.0 International
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First full version of fair_tracks JSON schema with example file #1

Closed sveinugu closed 5 years ago

sveinugu commented 5 years ago

@jmfernandez Have you looked at this yet?

jmfernandez commented 5 years ago

Hi @sveinugu , yes, I have been having a look at the generated JSON Schema and content. I'm using it just to fine tune the OWL terms validation, and I found that the EFO IRI is not working (http://www.ebi.ac.uk/efo/releases/2018-02-15/efo.owl should be https://www.ebi.ac.uk/efo/releases/v2018-02-15/efo.owl).

I'm adding checks for this, in order to validate whether the ontology is reachable

jmfernandez commented 5 years ago

I have just also realized that the generated JSON Schema has as $id the value https://www.elixir-europe.org/IS/FAIRGenomicTracks/json-schemas/0.1 , meanwhile the basic_example.json has as fair_tracks._schema the value https://www.elixir-europe.org/IS/FAIRGDataTracks/json-schemas/0.1

jmfernandez commented 5 years ago

Hi again. I have just finished the development of the extensions for Python in main branch, and I have also documented them: https://github.com/inab/GenomicDataTracks_JSON_schemas/tree/master/toolsForValidation

So, you can start validating. I have also added the JSON Schema partially fixed and a JSON to be validated, also partially fixed.

sveinugu commented 5 years ago

Replaced by https://github.com/inab/GenomicDataTracks_JSON_schemas/pull/2