search

fallerlab / ARF

Differential Ribosomal heterogeneity Prediction through Ribosome Profiling generated rRNA fragments and their Proximity to Ribosomal Proteins
GNU General Public License v3.0
6 stars 2 forks source link

GSEA analysis error #2

Closed jasons2389 closed 2 years ago

jasons2389 commented 2 years ago

Hello! I am running the pipeline, but when I get to the GSEA analysis is gives me this error: Error in if (abs(max.ES) > abs(min.ES)) { : missing value where TRUE/FALSE needed

If I run the pipeline with only two group I don't get the error. Do you know what could be the problem?

ferhatalkan commented 2 years ago

Hi, I'm not sure right away about what could cause this. How many samples and groups do u provide when you get the error?

jasons2389 commented 2 years ago

Hi, I am proving six samples with three groups. (2 samples per group)

ferhatalkan commented 2 years ago

Are you running the dripARF() wrapper or dripARF_predict_heterogenity() function? I will do some tests with same settings and get back here.

jasons2389 commented 2 years ago

I am using the predict heterogeneity function. Thanks!

ferhatalkan commented 2 years ago

Did you try the wrapper" Does it give the same error?

ferhatalkan commented 2 years ago

I could not generate the same error using the same function with 6 samples (2 per group) myself, therefore, I'm not sure what went wrong in your run.