search

fanagislab / GCE

GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis rate of the sequencing sample. The estimated result can be used to design the sequencing strategy.
43 stars 5 forks source link

the result of estimate_genome_character_real.pl #1

Closed zhoudreames closed 2 years ago

zhoudreames commented 3 years ago

I got the result in blow when i run the estimate_genome_character_real.pl:

The number of ranks within one unit of genomic frequency: 1 The automatically calculated lowfreq cutoff from P(x) is: 24 The estimated float-precision c by P(x) is: 92.6180714065804 The estimated integer-precision c by P(x) is: 92

The total number of kmer individuals is: 240097871172

The total number of nonadjusted-correct kmer individuals is: 240097871172

The total number of adjusted-correct kmer individuals is: The px_peak_kmer_indivduals is: 2363674488 The px_leftToPeak_kmer_individuals is: 44879920004 The theoretic peak rate is: 1.9150168 The theoretic left to peak rate is: 32.5492343059264

The total number of adjusted erroneous kmers: 4704922723.11315 The total number of adjusted correct kmers: 235392948448.887

Estimated G and a[1]: most rough : 2559583137 none discreate model : 2542502182 0.799617 continuous model: 2541544483 0.79217472 but i dont know where is the result about the estimation of repeat and heterozygosity ,could you help me? thank you!