fanglab / SMALR

SMALR: a framework for single-molecule level interrogation of the methylation status of SMRT reads.
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To make output better organized #1

Open fanggang opened 8 years ago

fanggang commented 8 years ago

Better to organize output in a three-layer hierarchy:

Layer 1 named by genome reference

Layer 2 named by motif_pos_SMsn_x or motif_pos_SMp_x where x is additional parameter information to differentiate among runs with different settings.

Layer 3 named by contig names and contig size. Remove '|' from HGAP output