Currently the buildcontrols program extracts control IPD information from whole-genome amplified (WGA) sequencing data, then uses these control IPD values for motif filtering. However, it would be useful to be able to get the control IPD values not from WGA data (which is not always available), but instead from the PacBio in silico IPD models that exist for each SMRT sequencing chemistry release.
Currently the buildcontrols program extracts control IPD information from whole-genome amplified (WGA) sequencing data, then uses these control IPD values for motif filtering. However, it would be useful to be able to get the control IPD values not from WGA data (which is not always available), but instead from the PacBio in silico IPD models that exist for each SMRT sequencing chemistry release.