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fanglab / nanodisco

nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
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Open and parse .RDS file #42

Closed yxhuang623 closed 1 year ago

yxhuang623 commented 2 years ago

Hi, I'm trying to open and visualize the .RDS file but I failed to find a right way to do it. Could you please give me some suggestions? Such information are very important for me to localize the moitifs in the genome of my dataset. Thank you so much!

touala commented 2 years ago

Hi @yxhuang623,

Those .RDS files are a standard R data format which allow saving data structure. You can open it within R with:

 df <- readRDS("<path_RDS_file>")

You can find a great write up here for more information. Please let me know if you have other questions.

Best,

Alan