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fanglab / nanodisco

nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
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prepare.parameters.ROC #55

Open hahaha12379 opened 2 years ago

hahaha12379 commented 2 years ago

Hi， I'm trying to draw ROC curve. But I don't know how to get these parameters. Please help me. I would be very grateful.

Here is the definition of this function. prepare.parameters.ROC <- function(smoothing_win_sizes, peak_filtering_radii, peak_widths, win_sizes, offsets, start_points, coverages=NA, thresholds=NA)

touala commented 2 years ago

Hi @hahaha12379,

Thank you for your interest in nanodisco. The function you're trying to use is intended for development only, which explain the absence of documentation. This also require two independent WGA datasets (one used as true WGA and the other used as a fake native to properly estimate false positive). Please let me know if you're still interested.

Best,

Alan

hahaha12379 commented 1 year ago

Hi Dr. Fang,

Thank you so much for your explanation!I have no other questions in the near future. Thank you sincerely for your reply.