Closed liuyangzzu closed 3 months ago
Hi, will you please sned me a sample VCF so, I can check the program. my email address is fjaryanius@gmail.com
Hi Farhangus,
Here I share you the input VCF file I used: https://storage.googleapis.com/jax-nanopore-01-project-data/aml_nanopore_all_samples_sniffles.vcf.gz
Let me know if you have issue to access it.
Below is my command used and error message:
python3 -m sniffles2_plot -i aml_nanopore_all_samples_sniffles.vcf -o all_samples_plots
/projects/li-lab/yang/anaconda3/envs/sniffles/lib/python3.10/site-packages/sniffles2_plot/chart_generator/sv_sites_per_genome.py:119: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator. ax.set_xticklabels(ax.get_xticklabels(), fontweight="bold") posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values posx and posy should be finite values An error occurred: string index out of range
reference to issue link: https://github.com/farhangus/Sniffles2_plot/issues/13
Thank you for your help!
Best Yang
farhangus @.***> 于2024年5月22日周三 16:20写道:
Hi, will you please sned me a sample VCF so, I can check the program. my email address is @.***
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Thanks for sending the file. I was checking your file and the problem is due to the lack of SUPP_VEC. In your VCF file, because of some reasons, there is no SUPP_VEC information, so the program cannot generate the related charts that are using SUPP_VEC.
Hi,
I want to plot heatmap and upset figures of multiple samples in my VCF file, but the command failed.
Below is my command used and error message: