Closed splaisan closed 10 months ago
Thank you for your message. Seaborn has been added as one of the required packages to the README. Currently, the program does not accept zip files; however, you can use the normal VCF file format. I will update you as soon as we add support for gzipped (gz) files as well.
thanks a lot @farhangus, I did. not realise it had to do with my vcf being compressed. it now worked like a charm If not too much work, maybe you could also pack the pictures into a self contained html report with a minimum of legends like deepvariant does, it would make it a nice addition for SVs very useful tool (maybe add to the readme that the VCF should be pain text!)
Please edit your install instruction to include 'seaborn' as requirement; I had to do it in my conda env to get the command execute (then I got an error message below).
The test data made it to plot but with my data it failed. The input is a fresh VCF obtained with sniffle2 (v2.2)
thanks in advance for your help