farhangus / Sniffles2_plot

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hard-coded path causing error #8

Closed jeremymchacon closed 8 months ago

jeremymchacon commented 9 months ago

Hello,

I installed sniffle2_plot with pip into a conda environment. When I try to run it, I get:


python3: can't open file 'src/sniffles2_plot/cli/vcf_visulaizer.py': [Errno 2] No such file or directory

I think the issue is because of hard-coded paths like so:


 f"python3 src/sniffles2_plot/cli/vcf_visulaizer.py -i {input_file_path} -o {output_file_path}"

For now I will get around it by calling vcf_visulaizer directly, but wanted to let you know.

Best,

Jeremy

farhangus commented 9 months ago

Thanks for letting me know, the issue is already solved and will be updated in the next release