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farhat-lab / gentb-site

The genTB project, the Django site, variant calling and prediciton pipeline, and mapping pipeline with hooks to two ravens
https://gentb.hms.harvard.edu
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new bug in mutation display from heatmap #242

Closed mahafarhat closed 3 years ago

mahafarhat commented 3 years ago

We seem to have a wrong drug to mutations mapping: we are supposed to only see rpoB, and rpoB promoter for RIF, instead we see some INH resistance genes:

mahafarhat commented 3 years ago

https://gentb.hms.harvard.edu/predict/a49acfd4b84f3871079a68687766e56a/

and click on RIF

mahafarhat commented 3 years ago

The bug may be bigger than I thought, I see resistance being predicted for STR and PZA but no mutations are showing up for the respective genes on the display. I checked the json files and the correct mutations are there.

doctormo commented 3 years ago

This issue is with the parsing of the data, it gets stored as PredictResultLocus objects which by that point as wrong.

doctormo commented 3 years ago

Sorry for the delay Maha, I got stuck on this issue. I believe I'ved fixed the issue and cleared out the old result save.