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farhat-lab / gentb-site

The genTB project, the Django site, variant calling and prediciton pipeline, and mapping pipeline with hooks to two ravens
https://gentb.hms.harvard.edu
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WDNN predict result display #253

Closed mahafarhat closed 2 years ago

mahafarhat commented 3 years ago

WDNN output, displays only 5 drugs instead of 13, although json file has drug prediction for 11 drugs. Note drugs predicted by the usual pipeline were 13, but the set of 11 is contained in the set of 13.

here is an example: prediction: https://gentb.hms.harvard.edu/predict/ee5c533e80721e0c3f97762fd139719d/

json: https://gentb.hms.harvard.edu/tb/media/data/tbdata_00000786/Peru4912_cut.matrix.json

mgro commented 3 years ago

The same happens with the Paired-end 2.2. pipeline.

Here the heatmap is not displayed correctly: https://gentb.hms.harvard.edu/predict/a39ad87c9ed3e4a215dae07bd9d2f0d7/

But interestingly here it is (same pipeline run): https://gentb.hms.harvard.edu/predict/629c20fa6465605ed3cf7bb89277991a/

doctormo commented 2 years ago

This is now fixed and live.