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farhat-lab
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gentb-site
The genTB project, the Django site, variant calling and prediciton pipeline, and mapping pipeline with hooks to two ravens
https://gentb.hms.harvard.edu
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PZA new model integration in genTB-RF
#218
mahafarhat
closed
3 years ago
1
Setting aligner minimap2 to short-read mode with prior paired fastq check
#217
mgro
closed
3 years ago
2
(maint) python clean up
#216
vladdoster
closed
3 years ago
0
Better way to check for gz extension
#215
vladdoster
closed
3 years ago
1
(fix) remove redundant import
#214
vladdoster
closed
3 years ago
0
(fix) easier to understand conditional logic
#213
vladdoster
closed
3 years ago
0
(fix) remove len() as a condition
#212
vladdoster
closed
3 years ago
0
(maint) update spoligotype_wrapper.sh
#211
vladdoster
closed
3 years ago
0
(docs) update README.md
#210
vladdoster
closed
3 years ago
0
storage limit of /n/groups/gentb_www/predictData is too low
#209
mahafarhat
closed
3 years ago
0
Delete dataset from Django site doesnot delete files in /n/groups/gentb_www/predictData/
#208
mahafarhat
closed
3 years ago
1
Revise lipworth scheme from predict lineage caller
#207
mahafarhat
closed
3 years ago
3
Update venv instructions to reflect upgrade to python3
#206
vladdoster
closed
4 years ago
0
Map visualization edits
#205
cbintz
closed
3 years ago
0
Fix the absolute paths on the vcf to csv program step of wdnn-from-vcf pipeline
#204
cbintz
closed
3 years ago
2
Update manage
#203
vladdoster
closed
4 years ago
0
gdp data
#202
cbintz
opened
4 years ago
0
Mutations section: Show number of drugs that strain is resistant to
#201
cbintz
closed
2 years ago
0
Mutations section: verify that only mutations of filtered gene locus data are shown
#200
cbintz
closed
4 years ago
0
Map visualization edits
#199
cbintz
closed
4 years ago
1
Clarify drug section re: selecting legend and grouped/stacked
#198
cbintz
closed
4 years ago
0
Move sort by arrows in gene locus section closer to the column title to improve UX
#197
cbintz
closed
4 years ago
0
Sort by name in gene locus section not working: ajax error
#196
cbintz
closed
4 years ago
0
Resolve ajax errors in gene locus section
#195
cbintz
closed
4 years ago
0
Clarify gene locus instructions
#194
cbintz
closed
4 years ago
0
Only show mutations of filtered data in gene locus section
#193
cbintz
closed
4 years ago
0
Make sure numbers in interface match data in gene locus section
#192
cbintz
closed
4 years ago
0
Drug chart: make it more clear when a drug is selected
#191
cbintz
closed
4 years ago
0
Lineages: Allow filtering by lineage
#190
cbintz
closed
4 years ago
0
Drug section: Verify numbers/size of bars
#189
cbintz
closed
4 years ago
0
Clarify that selected countries will turn red
#188
cbintz
closed
4 years ago
0
Specify "total" label: total number of strains/cases?
#187
cbintz
closed
4 years ago
0
added country failure directory and russia and uk to country map in u…
#186
cbintz
closed
4 years ago
0
Mutations section: show how many strains have a given mutation
#185
cbintz
closed
4 years ago
0
Remove gene type and strand sections from gene locus section:
#184
cbintz
closed
4 years ago
0
Drug section: Remove oversampling section
#183
cbintz
closed
4 years ago
0
Confirm labels on world map match uploaded data
#182
cbintz
closed
4 years ago
0
Data upload step
#181
cbintz
closed
3 years ago
0
Lineages: Scale circle sizes
#180
cbintz
closed
2 years ago
0
updated readme for macs
#179
cbintz
closed
4 years ago
0
Bump django from 2.2.4 to 2.2.13 in /requirements
#178
dependabot[bot]
closed
4 years ago
0
Bump django from 2.2.4 to 2.2.13
#177
dependabot[bot]
closed
4 years ago
0
Bump psutil from 5.6.3 to 5.6.6 in /requirements
#176
dependabot[bot]
closed
4 years ago
0
Bump django from 2.2.4 to 2.2.10 in /requirements
#175
dependabot[bot]
closed
4 years ago
1
Bump django from 2.2.4 to 2.2.10
#174
dependabot[bot]
closed
4 years ago
1
Bump django from 2.2.4 to 2.2.8 in /requirements
#173
dependabot[bot]
closed
4 years ago
1
Bump django from 2.2.4 to 2.2.8
#172
dependabot[bot]
closed
4 years ago
1
Predict not launching jobs
#171
mahafarhat
closed
4 years ago
1
MAPs: when drug is selected, mutation should be tabulated accross that drug phenotype in mutations tab
#170
mahafarhat
closed
3 years ago
7
Upload data into MAPs
#169
mahafarhat
closed
3 years ago
2
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