Open M-Serajian opened 1 year ago
Sorry about the delay. Thanks for attaching the log files. We will look into this issue.
@M-Serajian Do you still have the log file /blue/boucher/m.serajian/Final_TB/Deep_TB/GenTB/gentb-snakemake/.snakemake/log/2023-07-20T114312.454282.snakemake.log
and if so, could you upload it here?
Hello,
I want to kindly inform you that the dependencies of the Gentb-snakemake are not updated which caused me not to be able to set up the Conda environment. I could solve the issue and install the environment, but still, after running it, I got multiple errors in the pilon rules. I increased both the time and memory for this rule in the cluster.json; nevertheless, this problem still exists and unfortunately deprived us of using it. I have uploaded the .log files for your consideration.
Thanks Best M.S.
gentb_workflow_3392622.log gentb_workflow_3743549.log