farkkilab / tribus

Cell type based analysis of multiplexed imaging data
MIT License
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Smart clustering parameters #18

Open ftedo opened 2 years ago

ftedo commented 2 years ago

Smart grid sizing for SOM.
Clustering parameters should be dependent on the size of the data (nr of celltypes, markers or cells). Choose clustering variables (n, sigma, lr, iter) based on data length and width, number of labels in level and number of levels

jcasado commented 2 years ago

Add new-found logic to tribus core