Closed fereshtehizadi closed 5 years ago
Hi,
I am trying to plot my own marker genes in URD after graph clustering but I always face this error
Error in intI(i, n = d[1], dn[[1]], give.dn = FALSE) : invalid character indexing
> names(pr.markers) <- clusters > > I30.n <- length(unique(axial@group.ids$`Infomap-30`)) > > I30.cluster.assignments <- data.frame( + cluster=1:I30.n, + name=rep(NA, I30.n), + tip=rep(NA, I30.n), + row.names=1:I30.n + ) > View(I30.cluster.assignments) > plotDot(axial), genes = "DDB_G0280225", clustering="Infomap-30")
Could you please help me in solving this error
The problem was that my genes was not among the marker genes.
Hi,
I am trying to plot my own marker genes in URD after graph clustering but I always face this error
Could you please help me in solving this error