Calculating gene modules

[fereshtehizadi]

Hello,

Sorry, I want to work with URD gene modules but I don't have any imagination how a module file looks like.

Here you are mentioning

cm <- read.csv("~/Dropbox/Jeff-Yiqun/DE modules/AllModuleByAllCell.csv", row.names = 1)
# Load top genes for each module
what.loaded <- load("~/Dropbox/Jeff-Yiqun/DE modules/Module_top_25genes.Robj")
mod.genes.top25 <- top_25genes
what.loaded <- load("~/Dropbox/Jeff-Yiqun/DE modules/module_lineages.Robj")

Could I have access to these files so might be I understand how I produce my own NMF?

Thank you for any help