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farrellja / URD

URD - Reconstruction of Branching Developmental Trajectories
GNU General Public License v3.0
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Error in embed in Buildtree #26

Closed zacharylau10 closed 5 years ago

zacharylau10 commented 5 years ago

Hi, when I use Buildtree, it always prompt error about

Error in embed(1:n.pseudotime.groups, dimension = min(window.size, length(unique(visit.data$pseudotime.group))))

and I traced the source and I found 

  if (!is.null(pseudotime.max)) visit.data <- visit.data[which(visit.data$pseudotime <= pseudotime.max),]

will produce empty visit.data.

How can I solve it except filter the tips?

thanks