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farrellja / URD

URD - Reconstruction of Branching Developmental Trajectories
GNU General Public License v3.0
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Generate biased transition matrix #34

Closed Yichel518 closed 5 years ago

Yichel518 commented 5 years ago

Hi, @farrellja , my object is too large, so that I can not generate biased transition matrix: biased.tm <- pseudotimeWeightTransitionMatrix(object, pseudotime = "pseudotime", logistic.params = diffusion.logistic, pseudotime.direction = "<") The error as following is 'Error: cannot allocate vector of size 10.8 Gb‘ and my input object=1.8G, and the number of my cells is 38000. What can I do for this?

Yichel518 commented 5 years ago

I had download your farrellja/URD@debug and I have resolved this issue. Many thanks