Closed Kgies10 closed 6 years ago
Just before releasing the software, I removed some deprecated slots from the URD object, which included @group. I thought I had removed all references to it, but clearly missed a couple. I just fixed the bug, and increased the version number to 1.0.1. So, go ahead and update your URD installation (devtools::install_github(repo="farrellja/URD")
) and it should be corrected.
Great, thanks for updating!
Hi there,
I'm trying to do gene cascade in a 2D URD tree, but when I call aucprTestAlongTree as in:
I get this error:
So I looked at markersAUCPR and it calls:
But I didn't think URD objects had a slot called "group" just "group.ids". Why does markersAUCPR reference object@group?
For reference my tree, objTree, is an URD object: 18385 genes x 23602 cells. Any help would be greatly appreciated! Many thanks!