Open tracytktran opened 3 years ago
Hi, I'm having problems with running the gene cascade heatmap. Here are the lines: plotTree(axial.tree, "segment", cell.size = 1) morecells <- cellsAlongLineage(axial.tree, segments = c(1, 15)) glistpodo <- c("Podxl", "Mafb") podo_cascade <- geneCascadeProcess(axial.tree, "pseudotime", cells = morecells, glistpodo, cells.per.window = 5, ) geneCascadeHeatmap(podo_cascade)
plotTree(axial.tree, "segment", cell.size = 1) morecells <- cellsAlongLineage(axial.tree, segments = c(1, 15)) glistpodo <- c("Podxl", "Mafb") podo_cascade <- geneCascadeProcess(axial.tree, "pseudotime", cells = morecells, glistpodo, cells.per.window = 5, ) geneCascadeHeatmap(podo_cascade)
It didn't make any progress overnight beyond the first gene Podxl.
Thank you!
Hi, I'm having problems with running the gene cascade heatmap. Here are the lines:
plotTree(axial.tree, "segment", cell.size = 1) morecells <- cellsAlongLineage(axial.tree, segments = c(1, 15)) glistpodo <- c("Podxl", "Mafb") podo_cascade <- geneCascadeProcess(axial.tree, "pseudotime", cells = morecells, glistpodo, cells.per.window = 5, ) geneCascadeHeatmap(podo_cascade)It didn't make any progress overnight beyond the first gene Podxl.
Thank you!