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faskowit / app-fmri-2-mat

fmriprep outputs to connectivity matrices
MIT License
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Smoothing #15

Closed dcoynel closed 4 years ago

dcoynel commented 4 years ago

Hi, do I understand correctly from src/regress.py that you use a default smoothing kernel of smoothkern=6mm?

Could this be added to the README, or given an option to change?

Thanks!

faskowit commented 4 years ago

Hi, Thanks for the feedback. Indeed 6mm is the default smoothing kernel. If you are using the run.sh script, alternative options can be passed in via the -regressextra flag. So it would look like this.

run.sh -fmri .... -mask.... -regressextra -fwhm 3

I'll add some of this in the readme. I hope you find the code useful!

Cheers!