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faskowit / app-multiAtlasTT

brainlife.io version of maTT
MIT License
0 stars 5 forks source link

out of memory on lonestar5 #15

Closed soichih closed 3 years ago

soichih commented 3 years ago

Is it possible to increase the vmem requirement for this App? When this app runs on a resource for the first time, it often dies with out-of-memory while creating a SIF image.

slurmstepd: error: Detected 1 oom-kill event(s) in step 3251101.batch cgroup. Some of your processes may have been killed by the cgroup out-of-memory handler.
slurmstepd: error: get_exit_code task 0 died by signal
INFO:    Creating SIF file...
FATAL:   Unable to handle docker://faskowit/app-multiatlastt:0.0.5 uri: unable to build: while creating squashfs: create command failed: exit status 1: 
FATAL ERROR: Out of memory (cache_alloc)

I think vmem=16GB should get passed this step.. but I am not sure.

faskowit commented 3 years ago

sure sure, should I cut a new release with more vmem??? Also, on my newer branched 0.0.6 and 0.0.7... the docker builds are failing... hmmm....

soichih commented 3 years ago

I wouldn't mind just updating it on the current release.

What sort of failure are you having on Docker build?