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fastalgorithms / fmm3dbie

GNU General Public License v2.0
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Duplicate symbols in `laplack_wrap` #24

Closed inducer closed 4 months ago

inducer commented 4 months ago

On my fairly vanilla Debian system, this is what I dd:

$ cp make.inc.linux.gnu.openblas make.inc
$ make lib
[... stuff snipped...]
gfortran -shared -fPIC -fPIC -O3 -march=native -funroll-loops -std=legacy -w  -fopenmp -J .mod/ -Wl,--whole-archive lib-static/libfmm3dbie.a -Wl,--no-whole-archive -o libfmm3dbie.so -lm -lstdc++ -lgomp  -lopenblas  
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zzero_':
lapack_wrap_64.f90:(.text+0x0): multiple definition of `zzero_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x0): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dcopy_guru_':
lapack_wrap_64.f90:(.text+0x110): multiple definition of `dcopy_guru_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x110): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zvecvec_':
lapack_wrap_64.f90:(.text+0x150): multiple definition of `zvecvec_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x140): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `ztranspose_':
lapack_wrap_64.f90:(.text+0x1a0): multiple definition of `ztranspose_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x170): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zdiff_':
lapack_wrap_64.f90:(.text+0x500): multiple definition of `zdiff_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x4d0): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zratios_':
lapack_wrap_64.f90:(.text+0x6f0): multiple definition of `zratios_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x6c0): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zeigs_':
lapack_wrap_64.f90:(.text+0x7b0): multiple definition of `zeigs_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x780): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zsvd_':
lapack_wrap_64.f90:(.text+0xcb0): multiple definition of `zsvd_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0xc70): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dsvd_':
lapack_wrap_64.f90:(.text+0x1260): multiple definition of `dsvd_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x1220): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dinverse_':
lapack_wrap_64.f90:(.text+0x1650): multiple definition of `dinverse_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x1630): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zinverse_':
lapack_wrap_64.f90:(.text+0x17c0): multiple definition of `zinverse_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x1780): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dgausselim_':
lapack_wrap_64.f90:(.text+0x1930): multiple definition of `dgausselim_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x18d0): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dgausselim_vec_':
lapack_wrap_64.f90:(.text+0x1c80): multiple definition of `dgausselim_vec_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x1c10): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dleastsq_':
lapack_wrap_64.f90:(.text+0x1fc0): multiple definition of `dleastsq_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x1f60): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zgausselim_':
lapack_wrap_64.f90:(.text+0x2c30): multiple definition of `zgausselim_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x2b10): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dgausselim_zrhs_':
lapack_wrap_64.f90:(.text+0x2f80): multiple definition of `dgausselim_zrhs_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x2e60): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zmatvec_':
lapack_wrap_64.f90:(.text+0x3c00): multiple definition of `zmatvec_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x3a90): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dmatvec_':
lapack_wrap_64.f90:(.text+0x3cb0): multiple definition of `dmatvec_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x3b20): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dmatzvec_':
lapack_wrap_64.f90:(.text+0x3d50): multiple definition of `dmatzvec_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x3bb0): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dmatzvec_saved_':
lapack_wrap_64.f90:(.text+0x4140): multiple definition of `dmatzvec_saved_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x3fa0): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zmatmat_':
lapack_wrap_64.f90:(.text+0x4a30): multiple definition of `zmatmat_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x4840): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dmatmat_':
lapack_wrap_64.f90:(.text+0x4b00): multiple definition of `dmatmat_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x48f0): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zrmatmatt_':
lapack_wrap_64.f90:(.text+0x4bd0): multiple definition of `zrmatmatt_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x49a0): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dgemm_guru_':
lapack_wrap_64.f90:(.text+0x4db0): multiple definition of `dgemm_guru_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x4b40): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zgemm_guru_':
lapack_wrap_64.f90:(.text+0x4ea0): multiple definition of `zgemm_guru_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x4bd0): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `dgemv_guru_':
lapack_wrap_64.f90:(.text+0x4f90): multiple definition of `dgemv_guru_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x4c60): first defined here
/usr/bin/ld: lib-static/libfmm3dbie.a(lapack_wrap_64.o): in function `zgemv_guru_':
lapack_wrap_64.f90:(.text+0x5030): multiple definition of `zgemv_guru_'; lib-static/libfmm3dbie.a(lapack_wrap.o):lapack_wrap.f90:(.text+0x4cb0): first defined here
$ gfortran -v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-linux-gnu/13/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-25' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 13.2.0 (Debian 13.2.0-25)
mrachh commented 4 months ago

It seems like the archive file wants to include both lapack_wrap.o and lapack_wrap_64.o which is usually not allowed. Does the issue exist in a fresh installation as well? For e.g., does "make clean" or just deleting libfmm3dbie.a in lib-static, and building lib again fix the issue?

inducer commented 4 months ago

You're right. Gone after make clean. Sorry about the noise.