fastice
commented
1 year ago I am out for the evening but will look at this tomorrow- remind me if you don’t hear by tomorrow pm. IanIan JoughinPolar Science CenterApplied Physics LabU Washington206-221-3177On Nov 28, 2022, at 5:22 PM, Timothy Bartholomaus @.> wrote: Hi Ian, I'm somewhat loath to submit another issue here after my first, but now that I've got everything up and running on a machine at home (macbook pro 2016 intel chip) and my linux machine at work (CentOS 7), I really think this might be an actual bug. I've installed the same greenlandMapping environment on my 2021 M1 Pro macbook pro, and proceeded without issue. At a python console, I have no problem importing grimpfunc: (greenlandMapping) @. ~ % python Python 3.9.15 | packaged by conda-forge | (main, Nov 22 2022, 08:55:37) [Clang 14.0.6 ] on darwin Type "help", "copyright", "credits" or "license" for more information.
import grimpfunc
However, when I do the same within jupyter lab, I get a fairly long set of errors, despite having run python -m ipykernel install --user --name=greenlandMapping several times, both with and without the greenlandMapping environment activated. Within jupyter lab, with the greenlandMapping environment active and sitting idle (I can, for example, successfully import dask, geopandas, rioxarray, etc.), when I try and import grimpfunc I get an error with the boxPicker submodule that stems from the internal call to import hvplot.xarray I'm copying this error below, and also attaching two screenshots, if they offer any more context.
AttributeError Traceback (most recent call last) Cell In [1], line 1 ----> 1 import grimpfunc
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/grimpfunc/init.py:4 1 all = ['boxPicker', 'cmrUrls', 'Flowlines', 'get_urls', 'GrIMPSubsetter', 2 'NASALogin', 'pointInspector'] ----> 4 from grimpfunc.boxPicker import boxPicker 5 from grimpfunc.cmrUrls import cmrUrls 6 from grimpfunc.cmr import get_urls
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/grimpfunc/boxPicker.py:11 9 import panel as pn 10 import holoviews as hv ---> 11 import hvplot.xarray 12 import grimpfunc as grimp 13 import rioxarray
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/hvplot/xarray.py:61 57 xr.register_dataarray_accessor(interactive)(XArrayInteractive) 59 post_patch(extension, logo) ---> 61 patch()
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/hvplot/xarray.py:59, in patch(name, interactive, extension, logo) 56 xr.register_dataset_accessor(interactive)(XArrayInteractive) 57 xr.register_dataarray_accessor(interactive)(XArrayInteractive) ---> 59 post_patch(extension, logo)
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/hvplot/init.py:166, in post_patch(extension, logo) 164 def post_patch(extension='bokeh', logo=False): 165 if extension and not getattr(_hv.extension, '_loaded', False): --> 166 hvplot_extension(extension, logo=logo)
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/pyviz_comms/init.py:64, in extension.new(cls, *args, *kwargs) 62 except Exception: 63 pass ---> 64 return param.ParameterizedFunction.new(cls, args, **kwargs)
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/param/parameterized.py:3654, in ParameterizedFunction.new(class, *args, **params) 3652 inst = class.instance() 3653 inst.param._setname(class.name) -> 3654 return inst.call(*args,**params)
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/hvplot/utilities.py:45, in hvplot_extension.call(self, *args, params) 40 def call(self, *args, *params): 41 # importing e.g. hvplot.pandas always loads the bokeh extension. 42 # so hvplot.extension('matplotlib', compatibility='bokeh') doesn't 43 # require the user or the code to explicitely load bokeh. 44 compatibility = params.pop('compatibility', None) ---> 45 super().call(args, params) 46 backend = _hv.Store.current_backend 47 if compatibility in ['matplotlib', 'plotly'] and backend != compatibility:
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/holoviews/ipython/init.py:149, in notebook_extension.call(self, *args, **params) 147 completer.completions_sorting_key = self.completions_sorting_key 148 if not p.allow_jedi_completion and hasattr(IPCompleter, 'use_jedi'): --> 149 ip.run_line_magic('config', 'IPCompleter.use_jedi = False') 151 resources = self._get_resources(args, params) 153 Store.display_formats = p.display_formats
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/IPython/core/interactiveshell.py:2364, in InteractiveShell.run_line_magic(self, magic_name, line, _stack_depth) 2362 kwargs['local_ns'] = self.get_local_scope(stack_depth) 2363 with self.builtin_trap: -> 2364 result = fn(*args, **kwargs) 2365 return result
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/IPython/core/magics/config.py:163, in ConfigMagics.config(self, s) 159 from traitlets.config.loader import Config 160 # some IPython objects are Configurable, but do not yet have 161 # any configurable traits. Exclude them from the effects of 162 # this magic, as their presence is just noise: --> 163 configurables = sorted(set([ c for c in self.shell.configurables 164 if c.class.class_traits(config=True) 165 ]), key=lambda x: x.class.name) 166 classnames = [ c.class.name for c in configurables ] 168 line = s.strip()
File ~/opt/anaconda3/envs/greenlandMapping/lib/python3.9/site-packages/IPython/core/magics/config.py:164, in
AttributeError: type object 'CommManager' has no attribute 'class_traits'
As I mentioned at the top, I'm up and running on other systems, so this isn't urgent, but I thought I'd mention as a potential issue in case this comes up for anyone else, or if this is actually easily addressed or meaningful to you. Without debugging the call to import hvplot.xarray, specifically within a jupyter lab kernel, I'm not sure this is something I can get to the bottom of without a lot of effort. Thanks again.
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tbartholomaus
Hi Ian,
I'm somewhat loath to submit another issue here after my first, but now that I've got everything up and running on a machine at home (macbook pro 2016 intel chip) and my linux machine at work (CentOS 7), I really think this might be an actual bug.
I've installed the same
greenlandMappingenvironment on my 2021 M1 Pro macbook pro, and proceeded without issue. At a python console, I have no problem importing grimpfunc:However, when I do the same within jupyter lab, I get a fairly long set of errors, despite having run
python -m ipykernel install --user --name=greenlandMappingseveral times, both with and without thegreenlandMappingenvironment activated.Within jupyter lab, with the
greenlandMappingenvironment active and sitting idle (I can, for example, successfully import dask, geopandas, rioxarray, etc.), when I try andimport grimpfuncI get an error with the boxPicker submodule that stems from the internal call toimport hvplot.xarrayI'm copying this error below, and also attaching two screenshots, if they offer any more context.
As I mentioned at the top, I'm up and running on other systems, so this isn't urgent, but I thought I'd mention as a potential issue in case this comes up for anyone else, or if this is actually easily addressed or meaningful to you. Without debugging the call to
import hvplot.xarray, specifically within a jupyter lab kernel, I'm not sure this is something I can get to the bottom of without a lot of effort.Thanks again.