Fatal Error : Expected a Chromosome in the form of an integer or a string X, Y, XY, or MT in file

fastlmm / FaST-LMM

Python version of Factored Spectrally Transformed Linear Mixed Models

https://fastlmm.github.io/

Apache License 2.0

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Closed tinameiring closed 1 year ago

tinameiring commented 3 years ago

Is there a way that FaST-LMM can ignore chromosome names in plink files? I have scaffold names.

CarlKCarlK commented 1 year ago

Thanks for your bug report. This is fixed. Sorry for the long wait. See https://github.com/fastlmm/FaST-LMM/issues/36