When number of multiple phenotypes is large, run them in batches.

fastlmm / FaST-LMM

Python version of Factored Spectrally Transformed Linear Mixed Models

https://fastlmm.github.io/

Apache License 2.0

47 stars 11 forks source link

When number of multiple phenotypes is large, run them in batches. #26

Open CarlKCarlK opened 2 years ago

CarlKCarlK commented 2 years ago

The current code implicitly assumes that the number of phenotypes is smaller than the number of test SNPs in each (internal) batch. When the number of phenotypes is, for example, 100,000 single_snp uses too much memory.