fastobo / fastobo-py

Faultless AST for Open Biomedical Ontologies in Python.
http://fastobo.readthedocs.io
MIT License
24 stars 4 forks source link

Bump horned-owl from 0.11.0 to 0.13.0 #326

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Bumps horned-owl from 0.11.0 to 0.13.0.

Changelog

Sourced from horned-owl's changelog.

Version 0.13.0

This release includes a lot of clean ups, including many version bumps.

RDF parsing now has better location reporting for errors.

Version 0.12.0

The core data model has been updated to make IRI generic. This resolves a long standing problem that Horned-OWL was a single threaded library. This has also meant that SetOntology has now been rewritten to use SetIndex.

A general purpose visitor library has been added. At some point, we should use them for rendering, but for now, an IRIMappedIndex has been written.

A closure parser has been added for RDF, as it is often necessary to parse the whole import closure to make a complete RDF parse.

Updated error handling to use a single unified hierarchy.

Many type aliases are now new types meaning that defaults work better.

Parsing of GCIs has now been fixed for RDF/XML.

The methods for retrieving axioms for axiom kinds and for IRIs in the AxiomMappedIndex and the IRIMappedIndex have been renamed to disambiguate them - as axiom_for_kind and axiom_for_iri respectively.

Commits
  • 8810fdc chore: Release horned-owl version 0.13.0
  • 797add0 Update Version for release
  • cf169f1 Merge branch 'Eugenio2192-fix/owx-xml-namcespaces' into devel
  • 0144dcb Add test for namespace in XML parser
  • d02a414 Adds notes for building command line tools and adding dependency to project.
  • 9386770 Includes horned-compare in main horned binary.
  • 4b30d70 Update benches for newer API
  • 04bf42b Bumps quick-xml to version 0.26.0.
  • 75c8c8a Made all buffer Vec's local. Ready to try version bump for quick-xml.
  • 4d2b484 Refactors functions related to attribute value retrieval.
  • Additional commits viewable in compare view


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dependabot[bot] commented 1 year ago

Superseded by #330.