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fatiando / harmonica

Forward modeling, inversion, and processing gravity and magnetic data
https://www.fatiando.org/harmonica
BSD 3-Clause "New" or "Revised" License
208 stars 68 forks source link

Error with source depths of 0 #523

Closed mdtanker closed 1 month ago

mdtanker commented 1 month ago

Description of the problem:

Source depths of 0 in EquivalentSources fitting result in an ambiguous ZeroDivisionError. We should add a better warning to inform users why they are getting an error.

Full code that generated the error

import harmonica as hm

x=np.array([-323017, -321997, -320976, -319954, -318974])
y=np.array([-460472, -460478, -460480, -460479, -460476])
z=np.array([864, 863, 864, 864, 864])
coords = (x,y,z)
data = np.array([-79.585185, -79.477289, -79.280965, -79.010975, -78.693828])

eqs = hm.EquivalentSources(
    depth=0,
    damping=1e-3,
)

eqs.fit(coords, data)

Full error message

ZeroDivisionError                         Traceback (most recent call last)
ZeroDivisionError: division by zero

The above exception was the direct cause of the following exception:

SystemError                               Traceback (most recent call last)
Cell In[134], [line 14](vscode-notebook-cell:?execution_count=134&line=14)
      [7](vscode-notebook-cell:?execution_count=134&line=7) data = np.array([-79.585185, -79.477289, -79.280965, -79.010975, -78.693828])
      [9](vscode-notebook-cell:?execution_count=134&line=9) eqs = hm.EquivalentSources(
     [10](vscode-notebook-cell:?execution_count=134&line=10)     depth=0,
     [11](vscode-notebook-cell:?execution_count=134&line=11)     damping=1e-3,
     [12](vscode-notebook-cell:?execution_count=134&line=12) )
---> [14](vscode-notebook-cell:?execution_count=134&line=14) eqs.fit(coords, data)

File ~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:238, in EquivalentSources.fit(self, coordinates, data, weights)
    [234](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:234) else:
    [235](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:235)     self.points_ = tuple(
    [236](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:236)         p.astype(self.dtype) for p in vdb.n_1d_arrays(self.points, 3)
    [237](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:237)     )
--> [238](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:238) jacobian = self.jacobian(coordinates, self.points_)
    [239](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:239) self.coefs_ = vdb.least_squares(jacobian, data, weights, self.damping)
    [240](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:240) return self

File ~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:373, in EquivalentSources.jacobian(self, coordinates, points)
    [371](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:371) n_points = points[0].size
    [372](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:372) jac = np.zeros((n_data, n_points), dtype=self.dtype)
--> [373](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:373) self._jacobian_kernel[self.parallel](
    [374](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:374)     coordinates, points, jac, self.greens_function
    [375](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:375) )
    [376](https://file+.vscode-resource.vscode-cdn.net/home/mdtanker/RIS_gravity_inversion/notebooks/Ross_Ice_Shelf_inversion/~/miniforge3/envs/RIS_gravity_inversion/lib/python3.11/site-packages/harmonica/_equivalent_sources/cartesian.py:376) return jac

SystemError: CPUDispatcher(<function jacobian at 0x7fc5a29c8fe0>) returned a result with an exception set

System information

Output of conda list 

# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
accessible-pygments       0.0.5                    pypi_0    pypi
affine                    2.4.0              pyhd8ed1ab_0    conda-forge
aiobotocore               2.13.1             pyhd8ed1ab_0    conda-forge
aiohttp                   3.9.5           py311h459d7ec_0    conda-forge
aioitertools              0.11.0             pyhd8ed1ab_0    conda-forge
aiosignal                 1.3.1              pyhd8ed1ab_0    conda-forge
alabaster                 0.7.16                   pypi_0    pypi
alembic                   1.13.1             pyhd8ed1ab_1    conda-forge
alsa-lib                  1.2.11               hd590300_1    conda-forge
annotated-types           0.6.0                    pypi_0    pypi
anyio                     4.3.0              pyhd8ed1ab_0    conda-forge
aom                       3.8.2                h59595ed_0    conda-forge
archspec                  0.2.3              pyhd8ed1ab_0    conda-forge
argcomplete               3.3.0                    pypi_0    pypi
argon2-cffi               23.1.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0          py311h459d7ec_4    conda-forge
arrow                     1.3.0              pyhd8ed1ab_0    conda-forge
asciitree                 0.3.3                      py_2    conda-forge
astroid                   3.2.4                    pypi_0    pypi
asttokens                 2.4.1              pyhd8ed1ab_0    conda-forge
async-lru                 2.0.4              pyhd8ed1ab_0    conda-forge
attr                      2.5.1                h166bdaf_1    conda-forge
attrs                     23.2.0             pyh71513ae_0    conda-forge
aws-c-auth                0.7.17               he0b1f16_2    conda-forge
aws-c-cal                 0.6.11               heb1d5e4_0    conda-forge
aws-c-common              0.9.15               hd590300_0    conda-forge
aws-c-compression         0.2.18               hce8ee76_3    conda-forge
aws-c-event-stream        0.4.2                h01f5eca_8    conda-forge
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aws-c-mqtt                0.10.3               h50844eb_4    conda-forge
aws-c-s3                  0.5.7                hb7bd14b_1    conda-forge
aws-c-sdkutils            0.1.15               hce8ee76_3    conda-forge
aws-checksums             0.1.18               hce8ee76_3    conda-forge
aws-crt-cpp               0.26.6               hf567797_4    conda-forge
aws-sdk-cpp               1.11.267             hbf3e495_6    conda-forge
azure-core-cpp            1.11.1               h91d86a7_1    conda-forge
azure-storage-blobs-cpp   12.10.0              h00ab1b0_1    conda-forge
azure-storage-common-cpp  12.5.0               h94269e2_4    conda-forge
babel                     2.14.0             pyhd8ed1ab_0    conda-forge
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beautifulsoup4            4.12.3             pyha770c72_0    conda-forge
black                     24.4.2                   pypi_0    pypi
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blosc                     1.21.5               hc2324a3_1    conda-forge
bokeh                     3.4.1              pyhd8ed1ab_0    conda-forge
boltons                   24.0.0             pyhd8ed1ab_0    conda-forge
botocore                  1.34.131        pyge310_1234567_0    conda-forge
botorch                   0.7.3              pyhd8ed1ab_0    conda-forge
boule                     0.4.1              pyhd8ed1ab_0    conda-forge
bounded-pool-executor     0.0.3              pyhd8ed1ab_0    conda-forge
branca                    0.7.2              pyhd8ed1ab_0    conda-forge
brotli                    1.1.0                hd590300_1    conda-forge
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brotli-python             1.1.0           py311hb755f60_1    conda-forge
bzip2                     1.0.8                hd590300_5    conda-forge
c-ares                    1.28.1               hd590300_0    conda-forge
ca-certificates           2024.7.4             hbcca054_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
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cfitsio                   4.3.1                hbdc6101_0    conda-forge
cftime                    1.6.3           py311h1f0f07a_0    conda-forge
charset-normalizer        3.3.2              pyhd8ed1ab_0    conda-forge
click                     8.1.7           unix_pyh707e725_0    conda-forge
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comm                      0.2.2              pyhd8ed1ab_0    conda-forge
conda                     24.4.0          py311h38be061_0    conda-forge
conda-libmamba-solver     24.1.0             pyhd8ed1ab_0    conda-forge
conda-package-handling    2.2.0              pyh38be061_0    conda-forge
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distlib                   0.3.8                    pypi_0    pypi
distributed               2024.5.0           pyhd8ed1ab_0    conda-forge
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docutils                  0.21.2                   pypi_0    pypi
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earthaccess               0.10.0             pyhd8ed1ab_0    conda-forge
eigen                     3.4.0                h00ab1b0_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
et_xmlfile                1.1.0              pyhd8ed1ab_0    conda-forge
exceptiongroup            1.2.0              pyhd8ed1ab_2    conda-forge
executing                 2.0.1              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                hcb278e6_1    conda-forge
fasteners                 0.17.3             pyhd8ed1ab_0    conda-forge
ffmpeg                    6.1.1           gpl_hee4b679_108    conda-forge
fftw                      3.3.10          nompi_hc118613_108    conda-forge
filelock                  3.14.0             pyhd8ed1ab_0    conda-forge
fiona                     1.9.6           py311hf8e0aa6_0    conda-forge
fire                      0.6.0              pyhd8ed1ab_0    conda-forge
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flake8-pyproject          1.2.3                    pypi_0    pypi
fmt                       10.2.1               h00ab1b0_0    conda-forge
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fontconfig                2.14.2               h14ed4e7_0    conda-forge
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geos                      3.12.1               h59595ed_0    conda-forge
geotiff                   1.7.1               h6b2125f_15    conda-forge
geoviews                  1.12.0             pyhd8ed1ab_0    conda-forge
geoviews-core             1.12.0             pyha770c72_0    conda-forge
gettext                   0.22.5               h59595ed_2    conda-forge
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gflags                    2.2.2             he1b5a44_1004    conda-forge
ghostscript               10.03.0              h59595ed_0    conda-forge
giflib                    5.2.2                hd590300_0    conda-forge
gitdb                     4.0.11                   pypi_0    pypi
gitpython                 3.1.43                   pypi_0    pypi
gl2ps                     1.4.2                h0708190_0    conda-forge
glew                      2.1.0                h9c3ff4c_2    conda-forge
glib                      2.78.4               hfc55251_0    conda-forge
glib-tools                2.78.4               hfc55251_0    conda-forge
glog                      0.7.0                hed5481d_0    conda-forge
gmp                       6.3.0                h59595ed_1    conda-forge
gmpy2                     2.1.5           py311hc4f1f91_1    conda-forge
gmt                       6.5.0                h6fe46e5_0    conda-forge
gnutls                    3.7.9                hb077bed_0    conda-forge
gpytorch                  1.9.0                    pypi_0    pypi
graphite2                 1.3.13            h59595ed_1003    conda-forge
greenlet                  3.0.3           py311hb755f60_0    conda-forge
gshhg-gmt                 2.3.7             ha770c72_1003    conda-forge
gst-plugins-base          1.22.9               h8e1006c_0    conda-forge
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h11                       0.14.0             pyhd8ed1ab_0    conda-forge
h2                        4.1.0              pyhd8ed1ab_0    conda-forge
h5netcdf                  1.3.0                    pypi_0    pypi
h5py                      3.11.0                   pypi_0    pypi
harfbuzz                  8.3.0                h3d44ed6_0    conda-forge
harmonica                 0.6.0              pyhd8ed1ab_0    conda-forge
hdf4                      4.2.15               h2a13503_7    conda-forge
hdf5                      1.14.3          nompi_h4f84152_101    conda-forge
holoviews                 1.18.3             pyhd8ed1ab_0    conda-forge
hpack                     4.0.0              pyh9f0ad1d_0    conda-forge
httpcore                  1.0.5              pyhd8ed1ab_0    conda-forge
httpx                     0.27.0             pyhd8ed1ab_0    conda-forge
hvplot                    0.10.0             pyhd8ed1ab_0    conda-forge
hyperframe                6.0.1              pyhd8ed1ab_0    conda-forge
icu                       73.2                 h59595ed_0    conda-forge
identify                  2.5.36                   pypi_0    pypi
idna                      3.7                pyhd8ed1ab_0    conda-forge
imagesize                 1.4.1                    pypi_0    pypi
importlib-metadata        7.1.0              pyha770c72_0    conda-forge
importlib-resources       6.4.0              pyhd8ed1ab_0    conda-forge
importlib_metadata        7.1.0                hd8ed1ab_0    conda-forge
importlib_resources       6.4.0              pyhd8ed1ab_0    conda-forge
iniconfig                 2.0.0              pyhd8ed1ab_0    conda-forge
invert4geom               0.8.1              pyhd8ed1ab_0    conda-forge
ipykernel                 6.29.3             pyhd33586a_0    conda-forge
ipyleaflet                0.19.0                   pypi_0    pypi
ipython                   8.24.0             pyh707e725_0    conda-forge
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jaxtyping                 0.2.28             pyhd8ed1ab_0    conda-forge
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jmespath                  1.0.1              pyhd8ed1ab_0    conda-forge
joblib                    1.4.2              pyhd8ed1ab_0    conda-forge
json-c                    0.17                 h7ab15ed_0    conda-forge
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jsonpatch                 1.33               pyhd8ed1ab_0    conda-forge
jsonpointer               2.4             py311h38be061_3    conda-forge
jsonschema                4.22.0             pyhd8ed1ab_0    conda-forge
jsonschema-specifications 2023.12.1          pyhd8ed1ab_0    conda-forge
jsonschema-with-format-nongpl 4.22.0             pyhd8ed1ab_0    conda-forge
jupyter-leaflet           0.19.0                   pypi_0    pypi
jupyter-lsp               2.2.5              pyhd8ed1ab_0    conda-forge
jupyter-server-proxy      4.1.2                    pypi_0    pypi
jupyter_bokeh             4.0.4              pyhd8ed1ab_0    conda-forge
jupyter_client            8.6.1              pyhd8ed1ab_0    conda-forge
jupyter_core              5.7.2           py311h38be061_0    conda-forge
jupyter_events            0.10.0             pyhd8ed1ab_0    conda-forge
jupyter_server            2.14.0             pyhd8ed1ab_0    conda-forge
jupyter_server_terminals  0.5.3              pyhd8ed1ab_0    conda-forge
jupyterlab                4.2.0              pyhd8ed1ab_1    conda-forge
jupyterlab_execute_time   3.1.2              pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.3.0              pyhd8ed1ab_1    conda-forge
jupyterlab_server         2.27.1             pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        3.0.10             pyhd8ed1ab_0    conda-forge
kealib                    1.5.3                h2f55d51_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
kiwisolver                1.4.5           py311h9547e67_1    conda-forge
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latexcodec                3.0.0                    pypi_0    pypi
lcms2                     2.16                 hb7c19ff_0    conda-forge
ld_impl_linux-64          2.40                 h55db66e_0    conda-forge
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libarrow-acero            15.0.2           hac33072_3_cpu    conda-forge
libarrow-dataset          15.0.2           hac33072_3_cpu    conda-forge
libarrow-flight           15.0.2           hd42f311_3_cpu    conda-forge
libarrow-flight-sql       15.0.2           h9241762_3_cpu    conda-forge
libarrow-gandiva          15.0.2           hd4ab825_3_cpu    conda-forge
libarrow-substrait        15.0.2           h9241762_3_cpu    conda-forge
libasprintf               0.22.5               h661eb56_2    conda-forge
libasprintf-devel         0.22.5               h661eb56_2    conda-forge
libass                    0.17.1               h8fe9dca_1    conda-forge
libblas                   3.9.0           22_linux64_openblas    conda-forge
libboost-headers          1.84.0               ha770c72_2    conda-forge
libbrotlicommon           1.1.0                hd590300_1    conda-forge
libbrotlidec              1.1.0                hd590300_1    conda-forge
libbrotlienc              1.1.0                hd590300_1    conda-forge
libcap                    2.69                 h0f662aa_0    conda-forge
libcblas                  3.9.0           22_linux64_openblas    conda-forge
libclang                  15.0.7          default_h127d8a8_5    conda-forge
libclang13                15.0.7          default_h5d6823c_5    conda-forge
libcrc32c                 1.1.2                h9c3ff4c_0    conda-forge
libcups                   2.3.3                h4637d8d_4    conda-forge
libcurl                   8.7.1                hca28451_0    conda-forge
libdeflate                1.19                 hd590300_0    conda-forge
libdrm                    2.4.120              hd590300_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 hd590300_2    conda-forge
libevent                  2.1.12               hf998b51_1    conda-forge
libexpat                  2.5.0                hcb278e6_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libflac                   1.4.3                h59595ed_0    conda-forge
libgcc-ng                 13.2.0               h77fa898_7    conda-forge
libgcrypt                 1.10.3               hd590300_0    conda-forge
libgdal                   3.8.4                h9323651_0    conda-forge
libgettextpo              0.22.5               h59595ed_2    conda-forge
libgettextpo-devel        0.22.5               h59595ed_2    conda-forge
libgfortran-ng            13.2.0               h69a702a_7    conda-forge
libgfortran5              13.2.0               hca663fb_7    conda-forge
libglib                   2.78.4               h783c2da_0    conda-forge
libglu                    9.0.0             hac7e632_1003    conda-forge
libgomp                   13.2.0               h77fa898_7    conda-forge
libgoogle-cloud           2.22.0               h9be4e54_1    conda-forge
libgoogle-cloud-storage   2.22.0               hc7a4891_1    conda-forge
libgpg-error              1.49                 h4f305b6_0    conda-forge
libgrpc                   1.62.2               h15f2491_0    conda-forge
libhwloc                  2.10.0          default_h2fb2949_1000    conda-forge
libiconv                  1.17                 hd590300_2    conda-forge
libidn2                   2.3.7                hd590300_0    conda-forge
libjpeg-turbo             3.0.0                hd590300_1    conda-forge
libkml                    1.3.0             h01aab08_1018    conda-forge
liblapack                 3.9.0           22_linux64_openblas    conda-forge
libllvm14                 14.0.6               hcd5def8_4    conda-forge
libllvm15                 15.0.7               hb3ce162_4    conda-forge
libllvm16                 16.0.6               hb3ce162_3    conda-forge
libmamba                  1.5.8                had39da4_0    conda-forge
libmambapy                1.5.8           py311hf2555c7_0    conda-forge
libnetcdf                 4.9.2           nompi_h9612171_113    conda-forge
libnghttp2                1.58.0               h47da74e_1    conda-forge
libnl                     3.9.0                hd590300_0    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libogg                    1.3.4                h7f98852_1    conda-forge
libopenblas               0.3.27          pthreads_h413a1c8_0    conda-forge
libopenvino               2024.0.0             h2da1b83_5    conda-forge
libopenvino-auto-batch-plugin 2024.0.0             hb045406_5    conda-forge
libopenvino-auto-plugin   2024.0.0             hb045406_5    conda-forge
libopenvino-hetero-plugin 2024.0.0             h5c03a75_5    conda-forge
libopenvino-intel-cpu-plugin 2024.0.0             h2da1b83_5    conda-forge
libopenvino-intel-gpu-plugin 2024.0.0             h2da1b83_5    conda-forge
libopenvino-ir-frontend   2024.0.0             h5c03a75_5    conda-forge
libopenvino-onnx-frontend 2024.0.0             h07e8aee_5    conda-forge
libopenvino-paddle-frontend 2024.0.0             h07e8aee_5    conda-forge
libopenvino-pytorch-frontend 2024.0.0             he02047a_5    conda-forge
libopenvino-tensorflow-frontend 2024.0.0             h39126c6_5    conda-forge
libopenvino-tensorflow-lite-frontend 2024.0.0             he02047a_5    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libparquet                15.0.2           h6a7eafb_3_cpu    conda-forge
libpciaccess              0.18                 hd590300_0    conda-forge
libpng                    1.6.43               h2797004_0    conda-forge
libpq                     16.3                 ha72fbe1_0    conda-forge
libprotobuf               4.25.3               h08a7969_0    conda-forge
libre2-11                 2023.09.01           h5a48ba9_2    conda-forge
librttopo                 1.1.0               h8917695_15    conda-forge
libsndfile                1.2.2                hc60ed4a_1    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libsolv                   0.7.29               ha6fb4c9_0    conda-forge
libspatialindex           1.9.3                h9c3ff4c_4    conda-forge
libspatialite             5.1.0                h7bd4643_4    conda-forge
libsqlite                 3.45.3               h2797004_0    conda-forge
libssh2                   1.11.0               h0841786_0    conda-forge
libstdcxx-ng              13.2.0               hc0a3c3a_7    conda-forge
libsystemd0               255                  h3516f8a_1    conda-forge
libtasn1                  4.19.0               h166bdaf_0    conda-forge
libtheora                 1.1.1             h7f98852_1005    conda-forge
libthrift                 0.19.0               hb90f79a_1    conda-forge
libtiff                   4.6.0                ha9c0a0a_2    conda-forge
libtorch                  2.1.2           cpu_generic_h0ec3652_4    conda-forge
libunistring              0.9.10               h7f98852_0    conda-forge
libutf8proc               2.8.0                h166bdaf_0    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libuv                     1.48.0               hd590300_0    conda-forge
libva                     2.21.0               hd590300_0    conda-forge
libvorbis                 1.3.7                h9c3ff4c_0    conda-forge
libvpx                    1.14.0               h59595ed_0    conda-forge
libwebp-base              1.4.0                hd590300_0    conda-forge
libxcb                    1.15                 h0b41bf4_0    conda-forge
libxcrypt                 4.4.36               hd590300_1    conda-forge
libxkbcommon              1.7.0                h662e7e4_0    conda-forge
libxml2                   2.12.6               h232c23b_2    conda-forge
libzip                    1.10.1               h2629f0a_3    conda-forge
libzlib                   1.2.13               hd590300_5    conda-forge
linear-operator           0.2.0                    pypi_0    pypi
linkify-it-py             2.0.3              pyhd8ed1ab_0    conda-forge
llvmlite                  0.42.0          py311ha6695c7_1    conda-forge
locket                    1.0.0              pyhd8ed1ab_0    conda-forge
loguru                    0.7.2           py311h38be061_1    conda-forge
lz4                       4.3.3           py311h38e4bf4_0    conda-forge
lz4-c                     1.9.4                hcb278e6_0    conda-forge
lzo                       2.10              hd590300_1001    conda-forge
mako                      1.3.3              pyhd8ed1ab_0    conda-forge
mamba                     1.5.8           py311h3072747_0    conda-forge
mapclassify               2.6.1              pyhd8ed1ab_0    conda-forge
markdown                  3.6                pyhd8ed1ab_0    conda-forge
markdown-it-py            3.0.0              pyhd8ed1ab_0    conda-forge
markupsafe                2.1.5           py311h459d7ec_0    conda-forge
matplotlib                3.8.4           py311h38be061_0    conda-forge
matplotlib-base           3.8.4           py311h54ef318_0    conda-forge
matplotlib-inline         0.1.7              pyhd8ed1ab_0    conda-forge
mccabe                    0.7.0                    pypi_0    pypi
mdit-py-plugins           0.4.1              pyhd8ed1ab_0    conda-forge
mdurl                     0.1.2              pyhd8ed1ab_0    conda-forge
menuinst                  2.0.2           py311h38be061_0    conda-forge
minizip                   4.0.5                h0ab5242_0    conda-forge
mistune                   3.0.2              pyhd8ed1ab_0    conda-forge
more-itertools            10.2.0                   pypi_0    pypi
mpc                       1.3.1                hfe3b2da_0    conda-forge
mpfr                      4.2.1                h9458935_1    conda-forge
mpg123                    1.32.6               h59595ed_0    conda-forge
mpmath                    1.3.0              pyhd8ed1ab_0    conda-forge
msgpack-python            1.0.7           py311h9547e67_0    conda-forge
multidict                 6.0.5           py311h459d7ec_0    conda-forge
multimethod               1.12               pyhd8ed1ab_0    conda-forge
multipledispatch          0.6.0                      py_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mypy                      1.10.0                   pypi_0    pypi
mypy-extensions           1.0.0                    pypi_0    pypi
mysql-common              8.0.33               hf1915f5_6    conda-forge
mysql-libs                8.0.33               hca2cd23_6    conda-forge
myst-parser               3.0.1                    pypi_0    pypi
nbclient                  0.10.0             pyhd8ed1ab_0    conda-forge
nbconvert                 7.16.4               hd8ed1ab_1    conda-forge
nbconvert-core            7.16.4             pyhd8ed1ab_1    conda-forge
nbconvert-pandoc          7.16.4               hd8ed1ab_1    conda-forge
nbformat                  5.10.4             pyhd8ed1ab_0    conda-forge
nbsphinx                  0.9.4                    pypi_0    pypi
ncurses                   6.5                  h59595ed_0    conda-forge
nest-asyncio              1.6.0              pyhd8ed1ab_0    conda-forge
netcdf4                   1.6.5           nompi_py311he8ad708_100    conda-forge
nettle                    3.9.1                h7ab15ed_0    conda-forge
networkx                  3.3                pyhd8ed1ab_1    conda-forge
nlohmann_json             3.11.3               h59595ed_0    conda-forge
nodeenv                   1.8.0                    pypi_0    pypi
nomkl                     1.0                  h5ca1d4c_0    conda-forge
notebook-shim             0.2.4              pyhd8ed1ab_0    conda-forge
nox                       2024.4.15                pypi_0    pypi
nptyping                  2.5.0              pyhd8ed1ab_0    conda-forge
nspr                      4.35                 h27087fc_0    conda-forge
nss                       3.100                hca3bf56_0    conda-forge
numba                     0.59.1          py311h96b013e_0    conda-forge
numba-progress            1.1.0              pyhd8ed1ab_0    conda-forge
numcodecs                 0.12.1          py311h4332511_1    conda-forge
numpy                     1.26.4          py311h64a7726_0    conda-forge
ocl-icd                   2.3.2                hd590300_1    conda-forge
openh264                  2.4.1                h59595ed_0    conda-forge
openjpeg                  2.5.2                h488ebb8_0    conda-forge
openpyxl                  3.1.2           py311h459d7ec_1    conda-forge
openssl                   3.3.1                h4bc722e_2    conda-forge
opt_einsum                3.3.0              pyhc1e730c_2    conda-forge
optuna                    3.6.0              pyhd8ed1ab_0    conda-forge
optuna-integration        3.6.0              pyhd8ed1ab_0    conda-forge
orc                       2.0.0                h17fec99_1    conda-forge
ordered-set               4.1.0                    pypi_0    pypi
overrides                 7.7.0              pyhd8ed1ab_0    conda-forge
p11-kit                   0.24.1               hc5aa10d_0    conda-forge
packaging                 24.0               pyhd8ed1ab_0    conda-forge
pandas                    2.2.2           py311h320fe9a_0    conda-forge
pandoc                    3.3                  ha770c72_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
panel                     1.4.2              pyhd8ed1ab_0    conda-forge
param                     2.1.0              pyhca7485f_0    conda-forge
parso                     0.8.4              pyhd8ed1ab_0    conda-forge
partd                     1.4.2              pyhd8ed1ab_0    conda-forge
pathspec                  0.12.1                   pypi_0    pypi
patsy                     0.5.6              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
pcre2                     10.42                hcad00b1_0    conda-forge
pexpect                   4.9.0              pyhd8ed1ab_0    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    10.3.0          py311h18e6fac_0    conda-forge
pip                       24.0               pyhd8ed1ab_0    conda-forge
pixman                    0.43.2               h59595ed_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_1    conda-forge
platformdirs              4.2.1              pyhd8ed1ab_0    conda-forge
plotly                    5.22.0             pyhd8ed1ab_0    conda-forge
pluggy                    1.5.0              pyhd8ed1ab_0    conda-forge
ply                       3.11               pyhd8ed1ab_2    conda-forge
polartoolkit              0.5.1              pyhd8ed1ab_0    conda-forge
pooch                     1.8.1              pyhd8ed1ab_0    conda-forge
poppler                   24.02.0              h590f24d_0    conda-forge
poppler-data              0.4.12               hd8ed1ab_0    conda-forge
postgresql                16.3                 h8e811e2_0    conda-forge
pqdm                      0.2.0              pyhd8ed1ab_0    conda-forge
pre-commit                3.7.1                    pypi_0    pypi
proj                      9.3.1                h1d62c97_0    conda-forge
prometheus_client         0.20.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.42             pyha770c72_0    conda-forge
psutil                    5.9.8           py311h459d7ec_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pugixml                   1.14                 h59595ed_0    conda-forge
pulseaudio-client         16.1                 hb77b528_5    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pyarrow                   15.0.2          py311h78dcc79_3_cpu    conda-forge
pyarrow-hotfix            0.6                pyhd8ed1ab_0    conda-forge
pybind11-abi              4                    hd8ed1ab_3    conda-forge
pybtex                    0.24.0                   pypi_0    pypi
pybtex-docutils           1.0.3                    pypi_0    pypi
pycodestyle               2.11.1                   pypi_0    pypi
pycosat                   0.6.6           py311h459d7ec_0    conda-forge
pycparser                 2.22               pyhd8ed1ab_0    conda-forge
pyct                      0.5.0              pyhd8ed1ab_0    conda-forge
pydantic                  2.7.1                    pypi_0    pypi
pydantic-core             2.18.2                   pypi_0    pypi
pydata-sphinx-theme       0.15.2                   pypi_0    pypi
pyflakes                  3.2.0                    pypi_0    pypi
pygments                  2.18.0             pyhd8ed1ab_0    conda-forge
pygmt                     0.12.0             pyhd8ed1ab_0    conda-forge
pykdtree                  1.3.12          py311h7c22f60_0    conda-forge
pylint                    3.2.6                    pypi_0    pypi
pyogrio                   0.7.2           py311hf8e0aa6_1    conda-forge
pyparsing                 3.1.2              pyhd8ed1ab_0    conda-forge
pyproj                    3.6.1           py311hca0b8b9_5    conda-forge
pyqt                      5.15.9          py311hf0fb5b6_5    conda-forge
pyqt5-sip                 12.12.2         py311hb755f60_5    conda-forge
pyro-api                  0.1.2              pyhd8ed1ab_0    conda-forge
pyro-ppl                  1.9.0              pyhd8ed1ab_0    conda-forge
pyshp                     2.3.1              pyhd8ed1ab_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
pytest                    8.2.0              pyhd8ed1ab_0    conda-forge
pytest-cov                5.0.0              pyhd8ed1ab_0    conda-forge
python                    3.11.8          hab00c5b_0_cpython    conda-forge
python-cmr                0.11.0             pyhd8ed1ab_0    conda-forge
python-dateutil           2.9.0              pyhd8ed1ab_0    conda-forge
python-dotenv             1.0.1              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.19.1             pyhd8ed1ab_0    conda-forge
python-gitlab             4.4.0                    pypi_0    pypi
python-json-logger        2.0.7              pyhd8ed1ab_0    conda-forge
python-semantic-release   9.7.2                    pypi_0    pypi
python-tzdata             2024.1             pyhd8ed1ab_0    conda-forge
python_abi                3.11                    4_cp311    conda-forge
pytorch                   2.1.2           cpu_generic_py311h255d53b_4    conda-forge
pytz                      2024.1             pyhd8ed1ab_0    conda-forge
pyvista                   0.43.7             pyhd8ed1ab_0    conda-forge
pyvista-xarray            0.1.6              pyhd8ed1ab_0    conda-forge
pyviz_comms               3.0.2              pyhd8ed1ab_1    conda-forge
pyyaml                    6.0.1           py311h459d7ec_1    conda-forge
pyzmq                     26.0.3          py311h08a0b41_0    conda-forge
qt-main                   5.15.8              h5810be5_19    conda-forge
rasterio                  1.3.9           py311ha38370a_2    conda-forge
rdma-core                 51.0                 hd3aeb46_0    conda-forge
re2                       2023.09.01           h7f4b329_2    conda-forge
readline                  8.2                  h8228510_1    conda-forge
referencing               0.35.1             pyhd8ed1ab_0    conda-forge
reproc                    14.2.4.post0         hd590300_1    conda-forge
reproc-cpp                14.2.4.post0         h59595ed_1    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
requests-toolbelt         1.0.0                    pypi_0    pypi
rfc3339-validator         0.1.4              pyhd8ed1ab_0    conda-forge
rfc3986-validator         0.1.1              pyh9f0ad1d_0    conda-forge
rich                      13.7.1                   pypi_0    pypi
rioxarray                 0.15.5             pyhd8ed1ab_0    conda-forge
ris-gravity-inversion     0.0.1                    pypi_0    pypi
rpds-py                   0.18.1          py311h5ecf98a_0    conda-forge
rtree                     1.2.0           py311h3bb2b0f_0    conda-forge
ruamel.yaml               0.18.6          py311h459d7ec_0    conda-forge
ruamel.yaml.clib          0.2.8           py311h459d7ec_0    conda-forge
ruff                      0.4.4                    pypi_0    pypi
s2n                       1.4.12               h06160fa_0    conda-forge
s3fs                      2024.3.1           pyhd8ed1ab_0    conda-forge
scikit-learn              1.4.2           py311hc009520_0    conda-forge
scipy                     1.13.0          py311h517d4fd_1    conda-forge
scooby                    0.10.0             pyhd8ed1ab_0    conda-forge
seaborn                   0.13.2               hd8ed1ab_2    conda-forge
seaborn-base              0.13.2             pyhd8ed1ab_2    conda-forge
send2trash                1.8.3              pyh0d859eb_0    conda-forge
setuptools                69.5.1             pyhd8ed1ab_0    conda-forge
shapely                   2.0.4           py311h2032efe_0    conda-forge
shellingham               1.5.4                    pypi_0    pypi
simpervisor               1.0.0                    pypi_0    pypi
sip                       6.7.12          py311hb755f60_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sleef                     3.5.1                h9b69904_2    conda-forge
smmap                     5.0.1                    pypi_0    pypi
snakeviz                  2.2.0              pyhd8ed1ab_0    conda-forge
snappy                    1.2.0                hdb0a2a9_1    conda-forge
sniffio                   1.3.1              pyhd8ed1ab_0    conda-forge
snowballstemmer           2.2.0                    pypi_0    pypi
snuggs                    1.4.7                      py_0    conda-forge
sortedcontainers          2.4.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.5                pyhd8ed1ab_1    conda-forge
spdlog                    1.12.0               hd2e6256_2    conda-forge
sphinx                    7.3.7                    pypi_0    pypi
sphinx-autoapi            3.2.1                    pypi_0    pypi
sphinx-autodoc-typehints  2.1.0                    pypi_0    pypi
sphinx-book-theme         1.1.2                    pypi_0    pypi
sphinx-copybutton         0.5.2                    pypi_0    pypi
sphinx-design             0.5.0                    pypi_0    pypi
sphinxcontrib-applehelp   1.0.8                    pypi_0    pypi
sphinxcontrib-bibtex      2.6.2                    pypi_0    pypi
sphinxcontrib-devhelp     1.0.6                    pypi_0    pypi
sphinxcontrib-htmlhelp    2.0.5                    pypi_0    pypi
sphinxcontrib-jsmath      1.0.1                    pypi_0    pypi
sphinxcontrib-qthelp      1.0.7                    pypi_0    pypi
sphinxcontrib-serializinghtml 1.1.10                   pypi_0    pypi
sqlalchemy                2.0.30          py311h331c9d8_0    conda-forge
sqlite                    3.45.3               h2c6b66d_0    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
statsmodels               0.14.1          py311h1f0f07a_0    conda-forge
svt-av1                   2.0.0                h59595ed_0    conda-forge
sympy                     1.12            pypyh9d50eac_103    conda-forge
tbb                       2021.12.0            h00ab1b0_0    conda-forge
tbb-devel                 2021.12.0            h5ccd973_0    conda-forge
tblib                     3.0.0              pyhd8ed1ab_0    conda-forge
tenacity                  8.3.0              pyhd8ed1ab_0    conda-forge
termcolor                 2.4.0              pyhd8ed1ab_0    conda-forge
terminado                 0.18.1             pyh0d859eb_0    conda-forge
threadpoolctl             3.5.0              pyhc1e730c_0    conda-forge
tiledb                    2.20.1               hcf523ab_7    conda-forge
tinycss2                  1.3.0              pyhd8ed1ab_0    conda-forge
tinynetrc                 1.3.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.13          noxft_h4845f30_101    conda-forge
tokenize-rt               5.2.0                    pypi_0    pypi
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tomlkit                   0.12.5                   pypi_0    pypi
toolz                     0.12.1             pyhd8ed1ab_0    conda-forge
tornado                   6.4             py311h459d7ec_0    conda-forge
tqdm                      4.66.4             pyhd8ed1ab_0    conda-forge
tqdm-joblib               0.0.3                    pypi_0    pypi
traitlets                 5.14.3             pyhd8ed1ab_0    conda-forge
traittypes                0.2.1                    pypi_0    pypi
trame                     3.6.0                    pypi_0    pypi
trame-client              3.0.2                    pypi_0    pypi
trame-server              3.0.0                    pypi_0    pypi
truststore                0.8.0              pyhd8ed1ab_0    conda-forge
typeguard                 2.13.3             pyhd8ed1ab_0    conda-forge
types-python-dateutil     2.9.0.20240316     pyhd8ed1ab_0    conda-forge
typing-extensions         4.11.0               hd8ed1ab_0    conda-forge
typing_extensions         4.11.0             pyha770c72_0    conda-forge
typing_utils              0.1.0              pyhd8ed1ab_0    conda-forge
typish                    1.9.3              pyhd8ed1ab_0    conda-forge
tzcode                    2024a                h3f72095_0    conda-forge
tzdata                    2024a                h0c530f3_0    conda-forge
uc-micro-py               1.0.3              pyhd8ed1ab_0    conda-forge
ucx                       1.15.0               ha691c75_8    conda-forge
uqpy                      4.1.5              pyhd8ed1ab_0    conda-forge
uri-template              1.3.0              pyhd8ed1ab_0    conda-forge
uriparser                 0.9.8                hac33072_0    conda-forge
urllib3                   2.2.1              pyhd8ed1ab_0    conda-forge
utfcpp                    4.0.5                ha770c72_0    conda-forge
verde                     1.8.0              pyhd8ed1ab_0    conda-forge
virtualenv                20.26.1                  pypi_0    pypi
vtk                       9.2.6           qt_py311h1234567_220    conda-forge
vtk-base                  9.2.6           qt_py311h1234567_220    conda-forge
vtk-io-ffmpeg             9.2.6           qt_py311h1234567_220    conda-forge
wcwidth                   0.2.13             pyhd8ed1ab_0    conda-forge
webcolors                 1.13               pyhd8ed1ab_0    conda-forge
webencodings              0.5.1              pyhd8ed1ab_2    conda-forge
websocket-client          1.8.0              pyhd8ed1ab_0    conda-forge
wheel                     0.43.0             pyhd8ed1ab_1    conda-forge
widgetsnbextension        4.0.10             pyhd8ed1ab_0    conda-forge
wrapt                     1.16.0          py311h459d7ec_0    conda-forge
wslink                    2.0.2              pyhd8ed1ab_0    conda-forge
x264                      1!164.3095           h166bdaf_2    conda-forge
x265                      3.5                  h924138e_3    conda-forge
xarray                    2024.3.0           pyhd8ed1ab_0    conda-forge
xcb-util                  0.4.0                hd590300_1    conda-forge
xcb-util-image            0.4.0                h8ee46fc_1    conda-forge
xcb-util-keysyms          0.4.0                h8ee46fc_1    conda-forge
xcb-util-renderutil       0.3.9                hd590300_1    conda-forge
xcb-util-wm               0.4.1                h8ee46fc_1    conda-forge
xerces-c                  3.2.5                hac6953d_0    conda-forge
xkeyboard-config          2.41                 hd590300_0    conda-forge
xorg-fixesproto           5.0               h7f98852_1002    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.1.1                hd590300_0    conda-forge
xorg-libsm                1.2.4                h7391055_0    conda-forge
xorg-libx11               1.8.9                h8ee46fc_0    conda-forge
xorg-libxau               1.0.11               hd590300_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h0b41bf4_2    conda-forge
xorg-libxfixes            5.0.3             h7f98852_1004    conda-forge
xorg-libxrender           0.9.11               hd590300_0    conda-forge
xorg-libxt                1.3.0                hd590300_1    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    conda-forge
xorg-xf86vidmodeproto     2.3.1             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xrft                      1.0.1                    pypi_0    pypi
xyzservices               2024.4.0           pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yaml-cpp                  0.8.0                h59595ed_0    conda-forge
yarl                      1.9.4           py311h459d7ec_0    conda-forge
zarr                      2.18.0             pyhd8ed1ab_0    conda-forge
zeromq                    4.3.5                h75354e8_3    conda-forge
zict                      3.0.0              pyhd8ed1ab_0    conda-forge
zipp                      3.17.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hd590300_5    conda-forge
zstandard                 0.19.0          py311hd4cff14_0    conda-forge
zstd                      1.5.6                ha6fb4c9_0    conda-forge
mdtanker commented 1 month ago

I'm about to head off for a 3 week trip so won't be able to do anything about this for a little bit, but thought I'd post the issue before I forgot about it!

leouieda commented 1 month ago

Thanks @mdtanker! Much appreciated. Safe travels and hope to see you at a call sometime!