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faylward / viralrecall

Detection of NCLDV signatures in 'omic data
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Something wrong about python-----TypeError: concat() got an unexpected keyword argument 'sort' #14

Closed ZongzhiWu closed 2 years ago

ZongzhiWu commented 2 years ago

My python version: Python 3.5.6 The command that has been run: python viralrecall.py -i examples/arm29B.fna -p test_outdir -t 2 -f The output file did not generate the seven files in the README, only the following four files: test_outdir.faa test_outdir.markerout test_outdir.pfamout test_outdir.vogout Error is as follows: Traceback (most recent call last): File "viralrecall.py", line 733, in <module> status = main() File "viralrecall.py", line 728, in main run_program(input, project, database, window, phagesize, minscore, minhit, evalue, cpus, plotflag, redo, flanking, batch, summary_file, contiglevel) File "viralrecall.py", line 401, in run_program df = pandas.concat([df, s1], axis=1, sort=True) TypeError: concat() got an unexpected keyword argument 'sort'

faylward commented 2 years ago

This looks like a pandas issue- the syntax for that module is different for different versions unfortunately. Please try a newer version of Python and let me know if the issue persists.

ZongzhiWu commented 2 years ago

Thanks a lot, this problem have been solved after changing the version of Python several days ago.