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faylward / viralrecall

Detection of NCLDV signatures in 'omic data
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.markerout files #17

Open sipesk opened 2 years ago

sipesk commented 2 years ago

Hello,

This is not an issue but more of a request that if the markerout files can be made into .csv it would make a lot of downstream analysis and counting a lot easier :)

I've been trying to make a python script that does this task (*.markerout -> .csv) and its proving to be above my skills.

Thanks for your time and consideration !

faylward commented 2 years ago

Right now all output tables are generated with a to_csv command with the sep="\t" option. If you wanted you could modify your version so that these instances call sep="," instead. Beware that some protein annotations contain commas, so that is why I generally avoid these delimiters in annotation files.