Facing problem in running Viralrecall

[vmevada102]

After installing into the Conda environment i am facing following problem,

Traceback (most recent call last): File "viralrecall.py", line 733, in status = main() File "viralrecall.py", line 728, in main run_program(input, project, database, window, phagesize, minscore, minhit, evalue, cpus, plotflag, redo, flanking, batch, summary_file, contiglevel) File "viralrecall.py", line 401, in run_program df = pandas.concat([df, s1], axis=1, sort=True) TypeError: concat() got an unexpected keyword argument 'sort'

[faylward]

Have you tried python 3.5? I think later versions have pandas issues.

Frank

On Sat, Feb 11, 2023, 1:52 PM vmevada102 @.***> wrote:

After installing into the Conda environment i am facing following problem,

Traceback (most recent call last): File "viralrecall.py", line 733, in status = main() File "viralrecall.py", line 728, in main run_program(input, project, database, window, phagesize, minscore, minhit, evalue, cpus, plotflag, redo, flanking, batch, summary_file, contiglevel) File "viralrecall.py", line 401, in run_program df = pandas.concat([df, s1], axis=1, sort=True) TypeError: concat() got an unexpected keyword argument 'sort'

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[vmevada102]

I hve set the Python 3.5.2 in conda environment as recommended into the installation.

May i downgrade the python version?

[faylward]

And is this error on the test data or new data you are using?

On Sat, Feb 11, 2023, 8:08 PM vmevada102 @.***> wrote:

I hve set the Python 3.5.6 in conda environment as recommended into the installation.

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[vmevada102]

This error was found on both dataset.

Test data as well as own data

[vmevada102]

Kindly help me resolve the issue

[faylward]

This appears to be an issue specific to pandas - you will need to troubleshoot the version of pandas you have installed. Please see https://stackoverflow.com/questions/54312781/python3-prophet-model-predict-throws-typeerror-concat-got-an-unexpected-key

[abdealijivaji]

I run viralrecall with pandas v1.0.5 because I was running into all sorts of issues with the recent pandas version