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faylward / viralrecall

Detection of NCLDV signatures in 'omic data
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stuck at cumsum2 on metagenome #28

Open michoug opened 5 months ago

michoug commented 5 months ago

Hi I tried to run your tool on a metagenome (~80 k sequences) with the marker option

python viralrecall.py -i MG.fna -p MG -db marker -t 20 -c

but it apparently gets stuck for a very long time at the cumsum2 function. As this function is not useful in the case of a metagenome, I was wondering if there a way to treat the contigs independently from one another to just find signatures of viruses? Thanks Greg