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fbergmann / harmony_scripts

Utility scripts written during HARMONY 2021
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Parameter Scan: Nested repeated tasks? #8

Open luciansmith opened 3 years ago

luciansmith commented 3 years ago

My impression of the attached Copasi file is that it is running a 2D parameter scan, where you vary one parameter over a certain dimension, and at every step in that process, you also vary another parameter over its whole range. In SED-ML, presumably this would come out as nested repeated tasks.

However, instead, the SED-ML that's produced simply produces a single repeated task with two ranges of unequal lengths. If I'm understanding things correctly, this needs to be fixed. ARPP-16_Layer1_mutualInhibitions.zip

fbergmann commented 3 years ago

this has already been reported by the biomodels team, and a fix has been committed to git, next COPASI version will do it. I dont think there is a special thing that the scripts here could do to remedy that.

fbergmann commented 3 years ago

reading the issue in the other project, i see what you are after. The issue reported was just addressing writing out multiple ranges. but what you would rather have multiple repeatedTasks defined. i dont think this is something that scripts could handle here, so would have to be changed in COPASI itself.