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fbreitwieser / isobar

isobar - R library for the Analysis and quantitation of isobarically tagged MSMS proteomics data
https://bioconductor.org/packages/release/bioc/html/isobar.html
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Add emPAI exponent as new parameter #20

Open simpar1471 opened 2 years ago

simpar1471 commented 2 years ago

According to A. Kudlicki (1), the best exponent for emPAI calculations is 6.5. Could the calculate.emPAI() function include empai_base as a new parameter with default value 6.5 to reflect this update in the literature?

  1. The Optimal Exponent Base for emPAI Is 6.5. PLOS ONE 7, e32339 (2012). doi: 10.1371/JOURNAL.PONE.0032339