Default behavior when no protein groups are provided for correct.peptide.ratios()

fbreitwieser / isobar

isobar - R library for the Analysis and quantitation of isobarically tagged MSMS proteomics data

https://bioconductor.org/packages/release/bioc/html/isobar.html

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Default behavior when no protein groups are provided for correct.peptide.ratios() #8

Closed alyst closed 9 years ago

alyst commented 9 years ago

If "correct.peptide.ratios.with_protein.group" property is NULL, the default protein groups of 'ibspectra' object are used. I don't fully understand the whole logic of ratio correction and classes structure, so I'm not sure if the proposed default behaviour is correct.