Open jessmewald opened 2 years ago
I'm attempting to install the current release (v0.7.3) with the -j flag for jellyfish installation.
The series of commands I used to install and the error that results is shown below.
curl -L https://github.com/fbreitwieser/krakenuniq/archive/refs/tags/v0.7.3.tar.gz -o krakenuniq-0.7.3.tar.gz && \ tar -xf krakenuniq-0.7.3.tar.gz && \ cd krakenuniq-0.7.3 && \ mkdir krakenuniq_install && \ ./install_krakenuniq.sh -j /tools/krakenuniq-0.7.3/krakenuniq_install
---------------------------------------------------------------------- /bin/mkdir -p '/tools/krakenuniq-0.7.3/jellyfish-install/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c bin/jellyfish '/tools/krakenuniq-0.7.3/jellyfish-install/bin' libtool: install: /usr/bin/install -c bin/.libs/jellyfish /tools/krakenuniq-0.7.3/jellyfish-install/bin/jellyfish make[1]: Leaving directory '/tools/krakenuniq-0.7.3/jellyfish-install' make -C ./src clean install make: Entering directory '/tools/krakenuniq-0.7.3/src' Compiling with multithreading support: yes rm -rf classify classifyExact db_sort set_lcas db_shrink build_taxdb read_uid_mapping count_unique dump_taxdb query_taxdb grade_classification test_hll_on_db dump_db_kmers *.o *.dSYM *.gch g++ -Wall -Wextra -Wfatal-errors -pipe -O2 -std=c++11 -fopenmp -I./gzstream -D NDEBUG -c krakendb.cpp g++ -Wall -Wextra -Wfatal-errors -pipe -O2 -std=c++11 -fopenmp -I./gzstream -D NDEBUG -c quickfile.cpp g++ -Wall -Wextra -Wfatal-errors -pipe -O2 -std=c++11 -fopenmp -I./gzstream -D NDEBUG -c krakenutil.cpp g++ -Wall -Wextra -Wfatal-errors -pipe -O2 -std=c++11 -fopenmp -I./gzstream -D NDEBUG -c seqreader.cpp In file included from third_party/bxzstr/include/compression_types.hpp:14, from third_party/bxzstr/include/bxzstr.hpp:20, from seqreader.hpp:24, from seqreader.cpp:21: third_party/bxzstr/include/bz_stream_wrapper.hpp:13:10: fatal error: bzlib.h: No such file or directory 13 | #include <bzlib.h> | ^~~~~~~~~ compilation terminated. make: *** [Makefile:75: seqreader.o] Error 1 make: Leaving directory '/tools/krakenuniq-0.7.3/src' Error building KrakenUniq. See install_krakenuniq.sh -h for options.
Any help you can offer would be greatly appreciated.
Please install bzip2 development headers for your version of linux
I'm attempting to install the current release (v0.7.3) with the -j flag for jellyfish installation.
The series of commands I used to install and the error that results is shown below.
Any help you can offer would be greatly appreciated.