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fbreitwieser / krakenuniq

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
GNU General Public License v3.0
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krakenuniq-download error #142

Open sekhwal opened 1 year ago

sekhwal commented 1 year ago

I am trying to run the following command to download the database. However, it generates the following package error but it is already in my system.

krakenuniq-download --db krakenuniq_db/ --threads 40 --dust refseq/bacteria refseq/archaea

error:::::::::: krakenuniq-download --db krakenuniq_db/ --threads 20 krakenuniq_db/bacteria/ krakenuniq_db/archaea/ Can't locate LWP/Simple.pm in @INC (you may need to install the LWP::Simple module) (@INC contains: /anaconda3/envs/kraken_env/lib/perl5/5.32/site_perl /home/mmk6053/anaconda3/envs/kraken_env/lib/perl5/site_perl /anaconda3/envs/kraken_env/lib/perl5/5.32/vendor_perl /home/mmk6053/anaconda3/envs/kraken_env/lib/perl5/vendor_perl /anaconda3/envs/kraken_env/lib/perl5/5.32/core_perl /home/mmk6053/anaconda3/envs/kraken_env/lib/perl5/core_perl .) at /anaconda3/envs/krakenuniq_env/bin/krakenuniq-download line 18. BEGIN failed--compilation aborted at /anaconda3/envs/krakenuniq_env/bin/krakenuniq-download line 18

Alohagenetics commented 1 year ago

you can try the command: perl -MCPAN -e'install "LWP::Simple"'