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fbreitwieser / krakenuniq

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
GNU General Public License v3.0
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build database error #162

Closed wz115 closed 9 months ago

wz115 commented 10 months ago

when I build database ,it give me the error info. I do not know it is error or just an warning(It means i can use this database as normal ):

Building KrakenUniq LCA database (step 6 of 6)... Adding taxonomy IDs for sequences Adding taxonomy IDs for genomes Reading taxonomy index from taxDB. Done. Getting database0.kdb into memory (1.0 kB) ... Done Loaded database with 0 keys with k of 31 [val_len 4, key_len 8]. Reading sequence ID to taxonomy ID mapping ... [starting new taxonomy IDs with 1000000001]ERROR with taxon [1000120010;assembly;GCF_034555355.1 Pseudomonas sp. B188] - parent taxon 3104264 not in database! ERROR with taxon [1000120012;assembly;GCF_034555375.1 Pseudomonas sp. B33.4] - parent taxon 3104265 not in database!

QuietgraceH commented 9 months ago

Hello, how did you solve the problem? I also encountered the same problem. Looking forward to your reply.

wz115 commented 9 months ago

Hello, how did you solve the problem? I also encountered the same problem. Looking forward to your reply. Yes.The taxonomy ID for these genome are wrong.I delete these genome sequences.